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ATTTGAAGACAAAGCTCAGTATTGATGATGATTTGGCTTCAAGCCCTAAAGAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGgtacggattcccatccaactaggacctgtttgactgtttacctattcaagaaggtctagcatttctttatttaaaattcattccagaaaattcatgctgt...
species | Vitis vinifera |
transcript | Vv17s0000g04650.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCG TGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCTEST: gi|110423731|gb|EC990082.1|EC990082
genomic: GAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGgtacggattc ... tttttggcagTGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCT
EST: GAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCG TGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCT
genomic: GAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGgtacggattc ... tttttggcagTGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGAAGACAAAGCTCAGTATTGATGATGATTTGGCTTCAAGCCCTAAAGAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGgtacggattcccatccaactaggacctgtttgactgtttacctattcaagaaggtctagcatttctttatttaaaattcattccagaaaattcatgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat