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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGTCTCTGAAGTCATCTATTTTGTGGAGAAGAGGCTGAACAACTCACAAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtgattcattactggattgaatttgaatcttttcattgcctaatcaagctatataataaatcttgtaaagcaaaggcttgacttgatccgccct...

Basic information

species Vitis vinifera
transcript Vv17s0000g01370.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828801|gb|FQ419134.1|FQ419134
EST:     AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAA                         GTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
genomic: AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtga ... tgcattgcagGTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
EST: gi|351016978|gb|FQ424405.1|FQ424405
EST:     AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAA                         GTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
genomic: AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtga ... tgcattgcagGTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
EST: gi|122692257|gb|EC996717.1|EC996717
EST:     AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAA                         GTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
genomic: AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtga ... tgcattgcagGTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
EST: gi|352798795|gb|FQ478430.1|FQ478430
EST:     AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAA                         GTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG
genomic: AAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtga ... tgcattgcagGTGAGGAAACATCAACCACAGATGGATCAGATTTTGATCAAGTTTGAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTGTCTCTGAAGTCATCTATTTTGTGGAGAAGAGGCTGAACAACTCACAAGTTGCATATATCGCCTCTCACAAACTTCTATCAATGGCTGGCGTAAAAgtaagtgtgattcattactggattgaatttgaatcttttcattgcctaatcaagctatataataaatcttgtaaagcaaaggcttgacttgatccgccct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa