Sequence
atgc intronic sequence ATGC exonic sequenceTTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgtatgtccatgcacattcatttccttctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 8
---TTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgtatgtccatgc-------acattcatttccttctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc
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ATGTCAGAGCAGCTGAAGCTGCACTTCGTGCATTAAACAGGAATGATATTGCAGGCAAGAAAATCAAATTGGAGACCAGCCGTCTGGGTGCTGCTAGGCGgtaagtcatttgggtcttgtcaacagtgataatactctgtttgctgttttctttttagttcttactactactttcttcatcacttttataacatacatat----------
upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 8
---------------TTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgtatgtccatgcacattcatttccttctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc
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TAGAGTTTTATGATGTCCGAGCTGCGGAAGCTGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCACCCTAGgtttgaaacatggtggcttgacc---catttttttttcctc----tttttataaatttaatt----ttttctctaatttgtagt--agctcttgtaactgttttctgtatttt--
upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G17250.1 (Glycine max), 5'ss of exon 6
---TTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgta--tgtccatgcacattcatttcct-tctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc
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ATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGgttgctgctgccacttcttttttatttttaatttaattttttct--ctttttttaaattaacttttgcaactgttttctactat---tttattgcaacatggttg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707608|gb|FC056889.1|FC056889EST: GGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTG TTTGATGCAACTGTGCTCTTCTGAACTGGAGCAAGATGAATCCATTTTGTG
genomic: GGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgtatgtccat ... tttttgatagTTTGATGCAACTGTGCTCTTCTGAACTGGAGCAAGATGAATCCATTTTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGgtatgtccatgcacattcatttccttctagttgttactggcctgattaagatggacattaacttctgactgagatcagaaacctattccttttccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc