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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCCCGCTGGTGCAAAATCAGCAATACGAGGAAGTTGCCAAAAGCATTGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagttaagaatcatgaatgcgcatcatctgtggttgtgttttttctgcatgtatcatggtccaagcaattatggacatacttgagggacagctta...

Basic information

species Vitis vinifera
transcript Vv17s0000g00160.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71880156|gb|DT029211.1|DT029211
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|32245130|gb|CD710949.1|CD710949
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|27582433|gb|CB005128.1|CB005128
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|71879114|gb|DT028169.1|DT028169
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|18458200|gb|BM436478.1|BM436478
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|32244907|gb|CD710726.1|CD710726
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|71878554|gb|DT027609.1|DT027609
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|30321764|gb|CD005026.1|CD005026
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: gi|30253400|gb|CB970951.1|CB970951
EST:     TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG                         GTACATCAATAGGGAAGAGGTAAGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTCCCGCTGGTGCAAAATCAGCAATACGAGGAAGTTGCCAAAAGCATTGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagttaagaatcatgaatgcgcatcatctgtggttgtgttttttctgcatgtatcatggtccaagcaattatggacatacttgagggacagctta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggaca