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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga...

Basic information

species Vitis vinifera
transcript Vv16s0098g00290.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga--
| || |||||||| || |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||  | ||  | |   |  ||     | |  || ||  ||  | |  |     |   ||| |   | |  |  || || | | | ||   | |  |  
GATTTTCTACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAGAGGGAATGTAAACTGgtatgtcttgaaaaagtataattatagtgtaagacctagaagaatgaattctataatg-cactacaaattta-aatgttcgtatcagtaatatcccggtaca

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaatttgttttatttattctctgaga----
| || || ||||| || |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||  | ||  | |   |  || |    ||  |  ||  ||  | |  |     |   ||  |   | |  |   |||| | | | ||   | |       
GATTTTCGACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAAAGGAAATGTAAACTGgtatgtcttgaaaaactatta--atatagtttgagccagaagaatgaattctataatg-cactgcaaattta-aatggttgtatcagtaatatcccggtgcagt

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 4
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggatttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatgaaat-ttgttttatttattctctgaga---
|||| |||||||| || || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||||||| | || ||| |   | |||  ||   || ||   |     |||    |   |    |     || || | |     ||||  |  | | | ||    
GGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTCAGAGGCAATGTTAACTGgtatgtttttaa-taagttttgcattactc---tagtttgatggtatgtgacctgtaagaatgaatacttattgcactgcaaatttaaatggtgtatcagcatt

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 8
GGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCAATGTAAACTGgtatgttctcaagtaattggaggat-ttgtcatgtacttgagtaactagtggttggccggtgctatagtctaatg-aaatttgttttatttattctctgaga
|||| |||||||| || || ||||| ||||| || |||||||| |||||||||||||| ||||| || ||||||||||||||  |||||||||| |||||||||||| | ||  | ||      |  |||  | |  | |  | ||   |    || ||    | || |  | || ||| ||   |  | |||   |     
GGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGACACAACGGAGAAATCAACACACTCAGAGGCAATGTTAACTGgtatgttttgaataagttttgcattactgtagtttgatggtatgacctataa--ggacgaatatttattgcactgcaaacttaaatggtgtatcagcattat