Sequence
atgc intronic sequence ATGC exonic sequenceCTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctttgccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtgtgtccatgagcagggttggggttggaataaaaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g33710.4 (Oryza sativa), 5'ss of exon 8
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctt--tgccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtg-tgtccatgagcagggttggggttggaataaaaac
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CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTGTTGATTCATCTGACCCAATTGgtgagatcttgctattactaaatcaccatatgtgtgtatcatgcttctgctt-tatcctcttataatgatatattccagaaaggttgcttctttatcgagt--
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 8
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctt--tgccataatttttctatttatttcttgggaagtt---gggtgtgtgggtgtgtatagtgtgtccatgagcagggttggggttggaataaaaac
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CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcatgctgctgtaccgttacttttt-tttattataaagcctcaaaaacaatggctatttatctt-tgtcgctgaatgtcagctcg-ctagaatattg--
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G047867_T01 (Zea mays), 5'ss of exon 8
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctttgccataatttttctatttatttcttgggaagttgg-gtgtgtgggtgtgtatagtgt-gtccatgagcagggttggggttggaataaaaac
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CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt-gctataagaagtatagaactctcttgtatattttttatcacttcattcacatgccattatcgattaggttgcttcttgttgatttatttt-
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G13210.3 (Glycine max), 5'ss of exon 8
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctttgccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtgtgtccatgagcagggt-tggggtt--ggaataaaaac-
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CTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGgtatgtcattt-caataactactcatctaacatatttggt--taggagccatgtacttttggaattaatac-tgaacagaatatgttattaaggaataaaaaat
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G41600.1 (Glycine max), 5'ss of exon 8
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtccttt---gccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtgtgtccatgagcagggttggggttggaataaaaac
||||||||||||||| | || |||||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||| | || | ||| | | | || | | || | ||| | ||| || || | | | || | ||||
CTGTTGAATTTCTTAAATCTGCTTGTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCCGTGGgtatgtcgtttcaatttaaaactattcatctaacatattagaaccatgcacttttggaatta-atattgaa--caaaatgttgttaaggaatcaaatagtgtt
upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G53120.4 (Arabidopsis thaliana), 5'ss of exon 9
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatg-tcctttgccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtgtgtccatgagcagggttggggttggaataaaaac-----------------------
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CTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTGTTGATTCTTCAGATCCCGTAGgtatgattcatctgcaaaactctttgg---atatctgagtgattcttattt-tgtttttctaaatcaaaactcggttcagacttcagctacaaactctcacgttttcactctatataatcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687699|gb|EE065403.1|EE065403EST: ACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGG GTCCTGCTCAAGAACTTGTCGAGAGACCATTTTTTGAGACAACAGCCAGAG
genomic: ACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctt ... cctcatttagGTCCTGCTCAAGAACTTGTCGAGAGACCATTTTTTGAGACAACAGCCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGgtatgtcctttgccataatttttctatttatttcttgggaagttgggtgtgtgggtgtgtatagtgtgtccatgagcagggttggggttggaataaaaac
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa