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TTCACCCAACACCAACCCGAGCAGAGGTATCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctttctcttggagtttctagttccttaagatgtagctggagataatgggagcaccttggttcatattgggaaaaaaatgtttggcacttgagg...
species | Vitis vinifera |
transcript | Vv16s0050g02180.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAA GTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAEST: gi|30134905|gb|CB920243.1|CB920243
genomic: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctt ... ttacatgcagGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGA
EST: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAA GTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAEST: gi|110698146|gb|EE075377.1|EE075377
genomic: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctt ... ttacatgcagGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGA
EST: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAA GTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAEST: gi|30321651|gb|CD004913.1|CD004913
genomic: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctt ... ttacatgcagGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGA
EST: CGAGANGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAA GTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGA
genomic: CGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctt ... ttacatgcagGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACCCAACACCAACCCGAGCAGAGGTATCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctttctcttggagtttctagttccttaagatgtagctggagataatgggagcaccttggttcatattgggaaaaaaatgtttggcacttgagg
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa