1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgcaatctagatcctgttactttggttttcattattgtttaacatcatatgagaacctgaggaattttatttgggggtcaactctttggtggtttgaatttcag
species | Vitis vinifera |
transcript | Vv16s0050g01510.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110421124|gb|EC987412.1|EC987412
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110421576|gb|EC987874.1|EC987874
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110364112|gb|EC927758.1|EC927758
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|77581747|gb|DV219826.1|DV219826
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|161716688|gb|FC067833.1|FC067833
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|30329189|gb|CD012451.1|CD012451
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110383861|gb|EC948264.1|EC948264
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTGAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110384716|gb|EC949174.1|EC949174
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGEST: gi|110426741|gb|EC993160.1|EC993160
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
EST: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAG GAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
genomic: AGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgc ... tgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGgtttgcctgcaatctagatcctgttactttggttttcattattgtttaacatcatatgagaacctgaggaattttatttgggggtcaactctttggtggtttgaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG