1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCTGTGACAGAAGTTTTAAAATCTGCAAATATTAAAGTTAAAGTTGATGACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacattcttgaatcaatcctcgcataacctagtgttatcaaaggcaattgcttgggtcgcctaggccatcaggtcaggtggggcagataaaactc...
species | Vitis vinifera |
transcript | Vv16s0050g00960.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCAAATCAGAGAACCCCTGTGATG-AAATTCAATTTCTGGGAGATGAAG GGAATTCCTTTAAGGAATGAGATTGGTCCEST: gi|30330458|gb|CD013720.1|CD013720
genomic: CTCAGATCAGAGAACCCCTG-GATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacat ... ggtttttcagGGAGTTCCTTTAAGGATTGAAATTGGTCC
EST: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAG GGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGTEST: gi|351023829|gb|FQ448380.1|FQ448380
genomic: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacat ... ggtttttcagGGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGT
EST: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAG GGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGTEST: gi|351033120|gb|FQ446473.1|FQ446473
genomic: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacat ... ggtttttcagGGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGT
EST: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAG GGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGTEST: gi|27586757|gb|CB009452.1|CB009452
genomic: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacat ... ggtttttcagGGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGT
EST: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAG GGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCG
genomic: ACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacat ... ggtttttcagGGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGTGACAGAAGTTTTAAAATCTGCAAATATTAAAGTTAAAGTTGATGACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGgtctgtacattcttgaatcaatcctcgcataacctagtgttatcaaaggcaattgcttgggtcgcctaggccatcaggtcaggtggggcagataaaactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa