Sequence
atgc intronic sequence ATGC exonic sequenceATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaattccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g45970.1 (Oryza sativa), 5'ss of exon 8
ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaattccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcag
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ATTCTTGCCAAGAAGGGAGTGACCATATTACCTGACATTTACGCCAACTCCGGTGGTGTGATCGTTAGCTATTTTGAGTGGGTTCAGgtaattgaaatgccggttcctacg-atcttg--tttcgcattagctttggatgaatacagcatctcccttatgcgctttgaacggttgcag-------------------------------
upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g43470.1 (Oryza sativa), 5'ss of exon 8
ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaattcc-ctctatatttcttatatatcatgggt-tttatgaaaaattatatcgtttgaaacacagata-attgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcag
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ATACTCGCAAAGAAGGGAGTCATTGTGCTGCCAGATATCTATGCAAATTCAGGCGGCGTGGTCGTCAGCTATTTTGAGTGGGTTCAGgtaatagaacagaagattttgtgccttctttggatctttcccatgaatctaatggcatatgtttgtgctacgcctatggtgcag-----------------------------------------
upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S62_236V6.7 (Physcomitrella patens), 5'ss of exon 8
ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaa-ttccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagt-agtagtaacatcttaggattaatggttttatgttggcag---------------
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ATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaat-tcattt--atcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacag
upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S62_236V6.6 (Physcomitrella patens), 5'ss of exon 7
-------------ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaa-ttccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagt-agtagtaacatcttaggattaatggttttatgttggcag---------------
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GTCTACTGTACAGATCTTGGCGAAAAGGGGAGTGATTATTTTGCCTGACATCTATGCTAACTGTGGAGGAGTGACAGTCAGCTACTTCGAGTGGGTTCAGgtaagttcgatttttaactattgcagaggggctgttttcggagtggtaat-tcattt--atcattgtcaattgactttggttttgagtcacgtctacatgaagtcgatttctcaccgcttcaactgtctctgtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190533|gb|CF609882.1|CF609882EST: CTATTTTGAGTGGGTTCAG AATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAG
genomic: CTATTTTGAGTGGGTTCAGgtaattccct ... atgttggcagAATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTATCCAAGAAAGGAGTCGTAATCCTGCCTGACATCTATGCTAATGCTGGAGGTGTGACCGTGAGCTATTTTGAGTGGGTTCAGgtaattccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG