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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGAACGTGTGTTAGCAAGGGAGGAAGAAGTCAAGAAAAGAGCAATTGTGCATAAATCAGTCTATAGTGGTCCACAGATACGATATTCTTCAAAAAATGgcaagctttcccccatattagttttctggaccattgatagcctcccacaggctagtggatttttgggctatcaaaaagttctaatatttgattcagtgttgcttttgaaatgctgctaattgctttgaaatttgattctttgggctaaatatgtcttgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02650.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02650.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G26640.1 (Glycine max), 5'ss of exon 5
TTAGAACGTGTGTTAGCAAGGGAGGAAGAAGTCAAGAAAAGAGCAATTGTGCATAAATCAGTCTATAGTGGTCCACAGATACGATATTCTTCAAAAAATGgcaagctttcccccatattagttttctggaccattgatagcctcccacaggctagtggatttt-tgggctatcaaaaagttctaatatttgattcagtgttgcttttgaaatgctgctaattgctttgaaatttgattctttgggctaaatatgtcttgcag
||||| ||||| || || || |||||||| || |||| ||||||||||||||||||| | || | || ||| || |||||||| |||  |||||||||||| | | |||             ||   ||   | |||||  ||  |   ||  | || |||||    ||| ||   |  |  ||||  ||| ||    ||||  |||   || |   ||  || |   |  | |                            
TTAGAGCGTGTTTTGGCTAGAGAGGAAGAGGTTAAGAGAAGAGCAATTGTGCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATGgtaggattt-------------ttcaaggcataatgatatactgtctttggacactgcattttacctgctttcttgatttgttaat-cttggtt----gttgtctttttcatacgattatctgttaatatttctag--------------------------

upper sequence: Vv16s0039g02650.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G36740.1 (Arabidopsis thaliana), 5'ss of exon 8
TTAGAACGTGTGTTAGCAAGGGAGGAAGAAGTCAAGAAAAGAGCAATTGTGCATAAATCAGTCTATAGTGGTCCACAGATACGATATTCTTCAAAAAATGgcaagctttcccccatattagttttctggaccattgatagcctcccacaggctagtggatttttgggctatcaaaaagttctaatatttgattcagtgttgcttttgaaatgctgctaattgctttgaaatttgattctttgggctaaatatgtcttgcag
||||||||||| || |||||||| |||||||| || || | ||| |||||||||||| ||||||| |  ||||| ||||| || |||  ||||||| |||| ||||| |||   | | ||||  ||  | | | |   | | | ||| |    |||      |     | |  |||  || |||  ||  || |||                                                                 
TTAGAACGTGTCTTGGCAAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTACAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGgtaagctctccagtaaaatagtaatccagtctaattggatctttccagaaa--agtaagaactatatttgtttaaac-ttttaactttacatgcag-----------------------------------------------------------------