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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGgtacattttctcaaactccatattttagttctgtaggtttgtgcattaaaatatactgcagaaaatacaagttgatgtcacatttgattttccag

Basic information

species Vitis vinifera
transcript Vv16s0039g02400.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 5'ss of exon 9
GTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGgtacattttctcaaactccatattttagttctgtaggtttgtgcattaaaatatac-tgcagaaaatacaagttgatgtcacatttgattttccag
||||||| | |||||||| ||||| || ||||||||||||||||| |||||||| || ||||||||  | |||||    |   |   ||| ||| ||| |  |   |    ||     | |||||  || |   |   ||| ||  |  || ||               
GTATGAACTATTTGTTGGACAGCCCCCTTTTTATACAAATTCAGTCTATGCACTTATACGGCACATTGTCAAGgttggctcatt--gacttcatttttcaaataccttatcttcattgtcaaaattgacatatggtctatataatgtcgtggcag--------------

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G062524_T02 (Zea mays), 5'ss of exon 8
GTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGgtacattttctcaaactccatattttagttctgtaggtttgtgcattaaaatatactgcagaaaatacaagt-tgatgtcacatttgattttccag
 ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||  | |||||  | |      |  |   ||||||| || | || |  ||    ||  ||| |    |||||   |    | |||| |||   | |||     ||
ATATGAATTGTTTGTTGGACAGCCCCCCTTTTATACAAATTCGGTCTATGCACTTATCCGGCACATTGTCAAGgt-tactaggcttatttagttattttatttgt-tatggctgcctttttcaatgt----cagaactgatttatatgatttca---tcgatgcgttag

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 8
GTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGgtacattttctcaaactccatattttagttctgtaggtttgtgcattaaaata-tactgcagaaaatacaagttgatgtcacatttgattttccag
|||||| || |||||||| || || || ||||| |||||||| |||||||| |||||| | |||||  ||||||||||||| ||||||| |  ||  || ||| ||||          |  |  |  || | | |||  |      ||||  |   ||  ||  |||||
GTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGgtacattt-ctcaaacacattacatttgttatgtaatcacaaatgtgtatgtgctagtactgaaggttgggcctgatcactagttcaataatccag