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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGTTTTCAGTCATTCCAGCCATGGGGGAGCTAGTAGCAGGTGATCGGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAGgtttcaatccctactcctcacatcttaatagcatttagcatgcatgcatgcatgcatgcactgcctaggcaccttggggctctgcaaagccggtggatcc...

Basic information

species Vitis vinifera
transcript Vv16s0039g01590.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328508|gb|CD011770.1|CD011770
EST:     GGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAG                         GAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT
genomic: GGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAGgtttcaatcc ... gtggttgcagGAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT
EST: gi|83274635|gb|DV938731.1|DV938731
EST:     GGGCATCGTACCAATATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAG                         GAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT
genomic: GGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAGgtttcaatcc ... gtggttgcagGAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT
EST: gi|27580065|gb|CB002760.1|CB002760
EST:     GGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAG                         GAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT
genomic: GGGCATCGTACCAGTATTTAGTTGAGAGTATTCGCCGTTTTCCACCGCAGgtttcaatcc ... gtggttgcagGAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATAT