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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctctttcgctttgcttctctctag

Basic information

species Vitis vinifera
transcript Vv16s0022g01890.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g12540.2 (Oryza sativa), 5'ss of exon 7
GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctctttcgctttgcttctctctag----------------
||| |||||  | ||  |||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||  | || || |||||||||||||| ||||| |  ||     | |    ||  ||   ||  |   |   | ||   || |||  |||||   | | |  |   | |    |  | ||                
GGGTAGGGGGCGGATTGCTGTCATGCGCCAGGTTATAGATACTTATGAGAAATGGTGTTTAAGGTTGTCGACCTCACGGCTGAACCGTTGGTTGCGTAAGgtaaacatcttgctcaagtgttcggt---gcttacattggcattacagaacttgc-ttttagggtgtgtgacaagtaggaattg-caagtgacatggttgttgag

upper sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G848602_T01 (Zea mays), 5'ss of exon 8
GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatg------acaataatccctttagtcctgcccatccttcaaatatgcaag--ttgggtttta---atctctctttcg--ctttgcttctctctag
||| |||||  | ||  |||||||||||||||| || ||||| ||||| || ||||||||||||||||||||  | || || |||||||||||||| ||||| |  ||       |||  |||    || |   ||        |    | || | |      ||| ||   ||   |  |  |  ||| | |    ||   
GGGGAGGGGGCGGATTGCTGTGATGCGCCAGGTTATAGATACCTATGAGAAGTGGTGTTTAAGATTGTCAACATCACGGCTCAACCGTTGGTTGCGTAAGgtaaacattctgcttacagaaattttatttggtttgtttgcgtgtgtgttctgtaggaacacagttatatggattgataataagaacttagatctcatcc--

upper sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G40160.1 (Glycine max), 5'ss of exon 6
----------GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGg---tcagtatgacaataatc-cctttagtcctgcc----catccttcaaatatgcaagttgggttttaatctct--ctttcgctttgcttctctctag----------
          |||||||||  | |   ||||  ||   |||||||| ||||| |||||||||||||||| ||||||  | || |||||||| |||||||||||||  ||||   | ||||   | || ||| | ||| ||           || ||      |   || |||  || | || |||  |||| | || | ||   ||  |          
CAGCATTGGAGGGAAGGGGCCGGACCACTGTCTTGAATCAGGTCATCGATACTTATGAAAAATGGTGTTCAAGATTACCTACAGCTCGTCTAAACCGTTGgttgcaaaaggcaattagtacatccatcatcactttttgtaacagtaaaatatgctattggaagtaaatttgctttcttatttctcactttggattggatttgatcaggttatgagcag

upper sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G00640.1 (Glycine max), 5'ss of exon 4
--------------------------------------GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctctttcgctttgcttctctctag
                                      ||||||||| || |   ||||  ||   |||||||| || ||||||||||||||||||| ||||||  | || |||||||| |||||||||||||  |||                                                                                         
GTAAAAGGAATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGCAGGACCACTGTCTTGAATCAGGTCATCGAAACATATGAAAAATGgtgttcaagattacctacagctcgtctaaaccgttggttgcaaaag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964908|gb|GW838711.1|GW838711
EST:     AATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAG                         GTTATGAGCAGGCATTCTTGGAAAGATCAGGCTGCACAACCCAAGATCAAG
genomic: AATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatga ... ttctctctagGTTATGAGCAGGCATTCTTGGAAAGATCAGGCTGCACAACCCAAGATCAAG