1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAGTGGGACATCCTATCCAACGGCGGACCCATGCAGGAGATGGCCCATATCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatcaaatatctatagaaagagaagtattaggtatctctaggcctataccaaatattttcggtacataggggtggtgggtccaaataataatgca...
species | Vitis vinifera |
transcript | Vv15s0048g02000.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTCCTCAGAGCCAGT GCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATCEST: gi|71860193|gb|DT009248.1|DT009248
genomic: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatca ... caccccacagGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATC
EST: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTCCTCAGAGCCAGT GCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATCEST: gi|71861454|gb|DT010509.1|DT010509
genomic: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatca ... caccccacagGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATC
EST: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTCCTCAAAGCCAGT GCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGEST: gi|27586469|gb|CB009164.1|CB009164
genomic: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatca ... caccccacagGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTG
EST: TAGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGT GCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATC
genomic: TCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatca ... caccccacagGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTGGGACATCCTATCCAACGGCGGACCCATGCAGGAGATGGCCCATATCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTgtaagtatcaaatatctatagaaagagaagtattaggtatctctaggcctataccaaatattttcggtacataggggtggtgggtccaaataataatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataa