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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtatttagttggatctgctattttatatggatatagtaaagcatatgatgtgatgcagagttctgtttgtgcttatattcatgtcttatag

Basic information

species Vitis vinifera
transcript Vv15s0046g03670.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G08110.1 (Glycine max), 5'ss of exon 8
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtatttagttggatctgctat--tttatatggatatagtaaagcatatgatgtgatgcagagttctgtttgtgcttatattcat-gtcttatag-------------------------
||||||||||||||||||||||||||||||||||| ||  || | ||||  |||||||| |||||||| || ||||| |||||||| || ||   ||  |||    |||  || || | || |  ||  |   | | || | |  ||  |   | ||   |    || | |  |||| | ||                         
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAAGTTTTGCATGTTTAATGATGATATACAGgtgagaat---gtgagattaaatattgttaatgtagaaaatgttgaatgtgttatctaacacactgcattattgaagtaactactgaaagtctgaaagttcaattttacttcatgtcctatag

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 9
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtatttagttggatctgctattttata--------tggatatagtaaagcata-tgatgtgatgcag--agttctg---tttgtgcttatattcatgtcttatag
||||||||||||||||||||||||||||||||||| ||  || | ||||  |||| ||| |||||||| || ||||| |||||||| || |  |      |  |  | |||| ||        || || |  ||    | | || | | ||| ||  | | |||    ||    ||   |||||||| |||||
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgagattaaatattgttttgtagaaaatgttgaatgtgttatctaacactgctttaatgaagtaactactgaaacttcaattttacttcatgtcctatag

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G46340.1 (Glycine max), 5'ss of exon 8
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttag------------tatttagttgg-atctgctattttatatggatatagtaaagca-------tatgatgtga--tgcagagttctgtttgtgcttatattcat-gtcttatag
||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| |||||||| ||            ||||| | |   || |   || ||   ||  |  ||||| |||         ||| ||||  |  | |  ||  |||    | ||   ||| |||  ||||
TTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgatactatattttgctaacatttaaaatcttcagtgtgttaagtaatgcactgtgttcttgaagtgacttctaaatatcaattttccttcattgccattgtccaatag

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G39870.1 (Glycine max), 5'ss of exon 8
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttag------------tatttagttgg-atctgctattttatatggatatagtaaa------gcatatgatgtga--tgcagagttctgtttgtgcttatattcat-gtcttatag
||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| |||||||| ||            ||||| | ||  || |   || ||   ||  |  ||||        |    ||| ||||  |  | |  ||  ||     | || | ||| |||  ||||
TTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgatattatattttgctgacatttaaaatcttcagtgtgttaagtatgcactgtgttcttgaagtgacttctaaacatcaattgtctttcatttccattgtccaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699592|gb|EE076724.1|EE076724
EST:     CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG                         GGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
genomic: CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtattt ... tgtcttatagGGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
EST: gi|110699700|gb|EE076930.1|EE076930
EST:     C-CTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG                         GGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
genomic: CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtattt ... tgtcttatagGGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
EST: gi|110698263|gb|EE075598.1|EE075598
EST:     CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG                         GGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
genomic: CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtattt ... tgtcttatagGGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
EST: gi|33404797|gb|CF210424.1|CF210424
EST:     TTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG                         GGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
genomic: TTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtattt ... tgtcttatagGGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
EST: gi|161720282|gb|FC070543.1|FC070543
EST:     CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG                         GGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA
genomic: CACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtattt ... tgtcttatagGGAACTGCTGGTGTTGCTCTGGCGGGACTTTTAGGAACTGTTAGAGCACAA