Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtccattcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacag

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g58580.2 (Oryza sativa), 5'ss of exon 8
ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtccattcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacag
 | || ||||| || || || ||||| || ||||||||||| ||||| || ||| | ||| ||||||||||||||||||| || || || |||||||| ||  | |         |||  |       |||   |  ||| || |     | |    || || |||||    ||   ||| | ||||
GTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATgtaagccttc---------tatcctcatacaaatgtgccagaaattattggtt-tcatgatatttactgctg----tatcactt-taacag

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 9
ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc--attcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacag
 | || ||||| || || || ||||| || ||||||||||| |||||||| ||| | ||| ||||||||||||| ||||| || || || |||||||||||| |||     || |  ||  | |  ||   |  ||  ||   | | |   |||||      || |||   | | ||            
GTGCATAACATCCGACCTAAAATGGTGTCAGTGCTTCGTGAAAAGTTTGCACACATGAACTTGACATTTTCTATCGGAGGGCAGATTAGTTTTGATgtgagtctcctagaccaccagtacatgtatttattttcttgaaatgattgaaatcatgacatttactaatgccactaaaaaattccag-----

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G46390.1 (Glycine max), 5'ss of exon 9
-ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtccattcatctttatttttgctttgatgattcgaaaactagta--tcaatgactgaatgtattgctggtcataatgcttgtgacag
  ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||| |||||||| |||    |||  || | |  |  | | || |||||  |    |  ||     ||   | ||    |  ||  |   |||       ||| 
GGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGAtgtaagtaatgattt-tcatgacat--gatgtggtgattttatttttgataaagtgatagttcaacaggtc-ctaatttaaatatactccaca-

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G39800.1 (Glycine max), 5'ss of exon 9
ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtccattcatctttatttt-tgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacag
 ||||||||||||| || || ||||||||||| |||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||| |||||||| |||    | | || || ||    || | |  |||||  |    | ||    || | | ||   ||   |  |   |||        |||
GTTCACAACATACGCCCAAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGATgtaagt----aataattttcatggcatgatgtagtgattttatttttggtg---ataagtcaacagatc-ttaatttaaatatactccccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACGAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATGCTGCTTTGAGATACCTTTGA-G
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTT-GAGATACCTT-GATG
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     TGCTCACCTAAACCCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCGGGGACAAGACATACCGCTTGAAATACCTTGATGA
genomic: TGCTCACCTAAACC-TGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGA
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|71867011|gb|DT016066.1|DT016066
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110693362|gb|EE069529.1|EE069529
EST:     TGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGAGATCTAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGGCTGG-ACAAGACATAACGGCTTGACAAACCTTGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGG-CTGGGACAAGACATA-CTGCTTGAGATACCTTGAT
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     TTGCTCACCTAAACCTGAAATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAAATACCTTGAAGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGAACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTTGAGATACCTTGATGA
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTT-GAGATACCTTGATGA
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|32246999|gb|CD712818.1|CD712818
EST:     TGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAAGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|34364395|gb|CF405980.1|CF405980
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110725007|gb|EE101335.1|EE101335
EST:     ATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: ATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtccattcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA