Sequence
atgc intronic sequence ATGC exonic sequenceGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtggaatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G46620.1 (Glycine max), 5'ss of exon 6
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtggaatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg-----
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GCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTGGGAGATTTTAACAgtaagtgtgcttaatct--gaacttcactggcaatact--ctaatttaactccctcctctgt-ttctttctaccatttttccttacttagaatattcattttcta
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G46610.1 (Glycine max), 5'ss of exon 8
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtggaatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg------
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-CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACAGtaagtgtgcttaatcc--aaacttcattgacaatact--cttatgtaactcccttttctgt-ttctttccaccatatttccttatttgaaaggttcattttcttt
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G07770.2 (Glycine max), 5'ss of exon 8
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtgg-aatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg
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GCACTGGCTGCAGCTTCAAAATCTGTTGACTGTCTTAAGgttgttcatagtttgcatgcctattttattcttgcgggggatttaaacagtaagcatgcttaatcacttgactttgctgacaatgctctg--aatgtgactt------------------------------------------------
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G01210.1 (Glycine max), 5'ss of exon 8
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtgg-aatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg--
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GCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACAgtaagcatgcttaatcacttgactttgctgacaatgctctgaatgtgacttccctttctacttctttttactcattt---tcctgagatgagatgtgtgtcct
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G01710.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtggaatgaacagctgctgcaattattt--tgctgatgttccatcttgtatgaatctccatatgatatatgtagg-------------------
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GCTCTTGCTGCGGCGTCAAAAACTGTTGATTTTCTCAAGGTCGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGACAgtatgtacataatctcactggggcactttctagccaccaa-tgatgcctttcttccctattgaaac-ccaccctgctgttggattcatctgattatcatagtttgttgctcttgcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720865|gb|FC070980.1|FC070980EST: GGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA TGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTA
genomic: GGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgctt ... gtttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgcttttattttttgtatatgggtggaatgaacagctgctgcaattattttgctgatgttccatcttgtatgaatctccatatgatatatgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggaa