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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAAGTGGTGGTATGTGGTGCGGATCTTGCAATGGCACCATGCTGAAGGCCTGATTCTTCCTTCGCTCATCATTGATTGGGCTCTTCGTCAACTACAGgtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcag

Basic information

species Vitis vinifera
transcript Vv15s0046g02510.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G39550.1 (Glycine max), 5'ss of exon 3
TTTTAAGTGGTGGTATGTGGTGCGGATCTTGCAATGGCACCATGCTGAAGGCCTGATTCTTCCTTCGCTCATCATTGATTGGGCTCTTCGTCAACTACAGgt-attgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcag
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TTTTAGATGGTGGTATATTGTTCGGCTTTTGCAATGGCATCATGCTGAAGGGCTTCTTCTTCCTTCTCTTATCATTGACTGGGTTTTGCGTCAATTACAGgtgattgcatataagaagtattgtgtgt---tcatagaaaataaactgagtattttatatttt---------------------ttgctgatttcaatccttt-agacttaaggttttgattt--ttcccacttctgctc-ctttcag