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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatccatatcctaaatgcatgaatttctgattgcttatccatgcctatttggtccatttaacttttggtttttgacagtgctagtgt...

Basic information

species Vitis vinifera
transcript Vv15s0046g02460.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g57710.1 (Oryza sativa), 5'ss of exon 8
ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatccatatcctaaatgcatgaatttctgattgcttatccatgcctat-ttggtccatttaacttttggtttttgacagtgctagtgt
||| || ||  | || || | |||||| ||||| |  ||||||||| | ||||| |||| |||||| || | || |||||||||||| |||||||| ||||||||   |  |   |   ||| |      | | ||||   |  || |||         || ||  |  |  |      ||  ||  |             
ATACCTTACAATCGCAGTCTGTCCATTTTGCATTGTGTTTGCTGTTATATGGGCTGTTTATCGCCGGATGACCTATGCTTGGATTGGGCAAGATATTCTTgtaagtgaagtttcgtttttataccctcaccctcaattg--ggatgattaggaggttgaatgttaattaacatggtgcctgtcttcag-------------

upper sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G165351_T04 (Zea mays), 5'ss of exon 7
ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatccatatcctaaatgcatgaatttctgattgcttatccatgcctatttggtccatttaacttttggtttttgacagtgctagtgt
  |||| ||| |||| || |  ||||| ||| | |||||||||||||| ||||| ||||||||||   ||  ||||||||||||||| ||||| || || || ||    |  || |  |  |  |  |||| |    || |   ||      ||  |  ||| |   | ||  || ||  |                   
GCATCTTACTCTGGCAGTTTGCCCATTTTGCGTTGCATTTGCTGTTGTGTGGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtgaccatctgta-gtattcgatgcctcccattttagctgtggcatca-actgattcgagactttgcacgttcag-------------------

upper sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G01100.2 (Glycine max), 5'ss of exon 8
ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatccatatcctaaatgcatgaatttctgattgcttatccatgcctatttggtccatttaacttttggtttttgacagtgctagtgt---
|||||||||  | |||||  |||||||||||||||  |||||||| ||||||||||||| |||||        |||||||||||||| || |||||||||||||| | |  | | |  |  |   |   | |   |  |||  |   ||  | ||  || | ||||  || |   |||     |||     | ||| |||   
ATATCTGACAGTTGCTGTTACTCCATTCTGCATAGTGTTTGCTGTGGTTTGGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatagtttt-tttacttttgattagaaaataaatctattaattttactatatct-tctggtt-atctttttttcttcctttacattttctaatgttta

upper sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 9
ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatc-catatcctaaatgcatgaatttctgattgcttatccatgcctatttggtccatttaacttttggtttttgacagtgctagtgt-
|||||||||  | |||||  |||||||||||||||  ||||| || ||||||||||||| ||||||       |||||||||||||| ||||||||||||||||| | |  | |||  | | | ||      || ||| | | | |  |  |  ||  ||  |      ||||  ||||   ||||  |  ||  || | | 
ATATCTGACAGTTGCTGTTACTCCATTCTGCATAGTGTTTGCCGTGGTTTGGGCAGTTTATCGCCGTGCATCGTTTGCTTGGATTGGTCAAGATATCCTTgtaagaatagttttattacttttgcttgtaaaataaatctattaattttactatatatcttgtaaaaaaattt--ctttacattttctaatgttttattatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110401255|gb|EC967858.1|EC967858
EST:     GGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTT                         GGTATTGCACTCATCATCACAGTTCTTCAGATCGTTCGTGTTCCTAATCTC
genomic: GGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaa ... gtttttccagGGTATTGCACTCATCATCACAGTTCTTCAGATCGTTCGTGTTCCTAATCTC
EST: gi|110369217|gb|EC933370.1|EC933370
EST:     GGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTT                         GGTATTGCACTCATCATCACAGTTCTTCAGATCGTTCGTGTTCCTAATCTC
genomic: GGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaa ... gtttttccagGGTATTGCACTCATCATCACAGTTCTTCAGATCGTTCGTGTTCCTAATCTC