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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcagttagaaattatctgtgactcctgaactctgttggtcagaagttgctaactgcaatgattcatgcactgtaggagaaaaaaaaaatatggt...

Basic information

species Vitis vinifera
transcript Vv15s0045g00310.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697700|gb|EE074917.1|EE074917
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|22013045|gb|BQ798079.1|BQ798079
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|46918582|gb|CN547911.1|CN547911
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|110376567|gb|EC941627.1|EC941627
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|110360550|gb|EC923749.1|EC923749
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|71889466|gb|DT038521.1|DT038521
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|22011236|gb|BQ796270.1|BQ796270
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|110422498|gb|EC988823.1|EC988823
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|110427638|gb|EC994087.1|EC994087
EST:     TTGCAACTGTTGTCCCAAATCTTGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: gi|28967267|gb|CB346300.1|CB346300
EST:     TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT                         AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCTTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcagttagaaattatctgtgactcctgaactctgttggtcagaagttgctaactgcaatgattcatgcactgtaggagaaaaaaaaaatatggt

- - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa