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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAGgtgagttgaagtccaagtcatgtatggttttgattttatggttcttattgaagttcaaaatttctgctttgtgtgaaccagacattgattttttttcctt...

Basic information

species Vitis vinifera
transcript Vv15s0021g02450.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 3
AATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAGgtgagttgaagtccaagtca--tgtatggttttgattttatggttcttattgaagttcaaaatttctgctttgtgtgaaccagacattgattttttttcctt--
||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||   ||     | |  |||      |||| | |||   |||| || |  |    ||| | ||   | |||| |||  |   ||  | | | | ||   
AATTTACGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTGGCAAGAAGATCAAGgtaagtttctgtagctcttaactgttctagcttgaatgtattagtctttttcatat---gaatgtttggcct-tgtggacctcattctgtgtctatgttctata

upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 8
AATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAGgtgagttgaagtccaagtca--tgtatggttttgattttatggttcttattgaagttcaaaatttctgctttgtgtgaaccagacattgattttttttcctt
||| ||||||||||| |||||||||||||||||||| || |||||||||||  |||| ||||| ||||| |||| |  |     | |  |||       ||| | |||   |||| || |  |   |   || ||| |||||      |  |  ||  | | | | || 
AATTTACGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTAGCAAGAAGATCAAGgtaagtttatatagctcttaactgttctagcatgaatgtattagtcttgttcatat--gagtgttttgccttgtggacctgattctctgtgtctatgttcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863690|gb|DT012745.1|DT012745
EST:     TTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAG                         GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAG
genomic: TTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAGgtgagttgaa ... tattctacagGTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAG