Sequence
atgc intronic sequence ATGC exonic sequenceCTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagattaatttttaaagcttttccttaaaaaataaccatattgttgtccatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G07410.1 (Glycine max), 5'ss of exon 8
CTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagatt-------aatttttaaagcttttccttaaaaaataaccatattgttgtccatggcag
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CTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagctaattagtttcaccctatttttcattgcttatcttttgaaaa---ccaaattgt---ctatggcag
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 11
CTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagattaatttttaaagctt-ttccttaaaaaataaccatattgttgtccatggcag
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CTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACTTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagctaattaatttcaccttatttttcattgcttatcttatgaaaatcatattgtctgtggcag
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G23190.1 (Glycine max), 5'ss of exon 9
CTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagattaatttt-taaagcttttccttaaaaaataaccatattgttgtccatggcag---------------
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CTGAAAGAGATGAGGGCATTTTCAAAGATGTGGTTTCCATCTGTTAAGGACAACACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCAgtaaggacactgattaattgacttcaccttatttttcattggtcatatatcctggtttcatttaaaaccatattatttgtggcag
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S99_87V6.1 (Physcomitrella patens), 5'ss of exon 10
CTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagattaatttttaaagcttt--tccttaaaaaataaccatattgttgtccatggcag---------------------------------------------------------------------------------------------------
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CTGAAGGAGATGATTGGATTTTCAAAGCTGCTGTTTCCAACTGTCAGTGATGCAACCTTTTTTGAGAGCTGTGGCGTAGCAGATCTGATCACTACATGCTgtaatttttcacccacttttgagtttactgcttggattatgctgcactcactatttcgcgatagttactatatgcatgttacatgtaatgtacttcttaatttagtattagttacaaagcgaatcacaagtgtcattgagatgtacccttggtatttgaatatttcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690719|gb|EC956681.1|EC956681EST: CAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCT TGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGA
genomic: CAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagc ... tccatggcagTGGGAGGAAGAAACAGGAAAGTTGCAGAGGCTTTTGCAAGGAATGGAGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAAGGGAGATGAAGGCTTTCTCCAAGTTGCTGTTCTCATCTGTTAGAGACAGTACCTTCTTTGAGAGCTGTGGCATAGCTGATCTCATCACTACATGCTgtaaggaagcagatagattaatttttaaagcttttccttaaaaaataaccatattgttgtccatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT