1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGTTCCCTGCATCCCAGACTTACAGAGAGCTGGTCTCGTGTTCAAATTGTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctgtctacttgttcttattaaaaatttaataagctgtacgccatcgcatgctgcctctatcaataatagaagtgctaggcaaataacagttgg...
species | Vitis vinifera |
transcript | Vv14s0128g00370.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|110723248|gb|EE100342.1|EE100342
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|30132449|gb|CB917788.1|CB917788
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|110366356|gb|EC930222.1|EC930222
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|30325038|gb|CD008300.1|CD008300
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|110427592|gb|EC994039.1|EC994039
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|87584849|gb|DY473852.1|DY473852
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|29784787|gb|CB341220.2|CB341220
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|110375281|gb|EC940255.1|EC940255
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACAEST: gi|32267603|gb|CD716566.1|CD716566
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
EST: GTACTGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAG AGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
genomic: GTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctg ... ttggttgcagAGCAATGAGCAGATAAAGCAATATGTTCACTTGTTGAACTCTACCCTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTTCCCTGCATCCCAGACTTACAGAGAGCTGGTCTCGTGTTCAAATTGTACCGACTACCAGTCCAGAAGATTAGAAATTCGATATGGACAGAAAAAGgttagtcctgtctacttgttcttattaaaaatttaataagctgtacgccatcgcatgctgcctctatcaataatagaagtgctaggcaaataacagttgg
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