1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAGCGAAGGCAATTAATTTGGTCCATATACGGCAGGATCTTGTTGAAAGTGGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAGgtaaagttgaacatggttcctcttcttgttttatgatggtcattggaccatatagtcatctgaaagattttctcattggtaagataattttctaccctgg...
species | Vitis vinifera |
transcript | Vv14s0083g00990.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAG GACAACAAGTTATTGTTTGAATTTGGCTGCTGAGCAAGAGAAAACTGTTACEST: gi|110396492|gb|EC962181.1|EC962181
genomic: GGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAGgtaaagttga ... tatgttgcagGACAACAAGTTATTGTTTGAATTTGGCTGCTGAGCAAGAGAAAACTGTTAC
EST: GGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAG GACAACAAGTTATTGTTTGAATTTGGCTGCTGAGCAAGAGAAAACTGTTAC
genomic: GGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAGgtaaagttga ... tatgttgcagGACAACAAGTTATTGTTTGAATTTGGCTGCTGAGCAAGAGAAAACTGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCGAAGGCAATTAATTTGGTCCATATACGGCAGGATCTTGTTGAAAGTGGCCATGCCTTGTTAAACCATGCTTATCGTGCACAACAAGAATATGAAAGgtaaagttgaacatggttcctcttcttgttttatgatggtcattggaccatatagtcatctgaaagattttctcattggtaagataattttctaccctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataa