1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctctcttcctcttacctcttttctcttgtgctagcgccattaaagttattgatagttgattttaaatgctaaattatttgttgcttttattcc...
species | Vitis vinifera |
transcript | Vv14s0083g00540.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG GTGTCTAACCGACTAGAGGAACTGAAGTTGEST: gi|351012823|gb|FQ430386.1|FQ430386
genomic: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctc ... aataaattagGTGTCTAAGCGACTAGAGGAGCTGAAGTTG
EST: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG GTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGAEST: gi|349827061|gb|FQ421334.1|FQ421334
genomic: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctc ... aataaattagGTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGA
EST: AGGATGCAATGAGTCCAGATACACTATTACCGATGGCCTACTCAATCAAG GTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGAEST: gi|349829128|gb|FQ419660.1|FQ419660
genomic: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctc ... aataaattagGTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGA
EST: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG GTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGAEST: gi|110417184|gb|EC983219.1|EC983219
genomic: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctc ... aataaattagGTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGA
EST: AGGATGCGATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG GTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGA
genomic: AGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctc ... aataaattagGTGTCTAAGCGACTAGAGGAGCTGAAGTTGGAGTATGAGAAGCAAAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAGgttctctctctcttcctcttacctcttttctcttgtgctagcgccattaaagttattgatagttgattttaaatgctaaattatttgttgcttttattcc
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc