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AGCACAGGAAAGTAGGAAGGAAGAGTTGGAAAAATTGATGCGAGACCAGGAAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcccaatttttttttttcctgtgaaataattgaaatatcatgaaagtttcaagaggctttgatatgtatttgttacatgaaaatagaaactaa...
species | Vitis vinifera |
transcript | Vv14s0068g01280.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTEST: gi|45770351|gb|CN006203.1|CN006203
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: TTGC-ATGGTGCT-TACCAG-TAT-GGGAG G-TTTCAGCTCCTGGATGCA-TTTTGTGCTGTACGTGT-TTTGCAGAGAGTEST: gi|349827680|gb|FQ422548.1|FQ422548
genomic: TTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTEST: gi|110699022|gb|EE077184.1|EE077184
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCGGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGGGCTGEST: gi|110688297|gb|EE066689.1|EE066689
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTG
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTEST: gi|351022393|gb|FQ445168.1|FQ445168
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTEST: gi|351013608|gb|FQ429749.1|FQ429749
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTEST: gi|71887796|gb|DT036851.1|DT036851
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
EST: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAG GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
genomic: AAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcc ... tctccttcagGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACAGGAAAGTAGGAAGGAAGAGTTGGAAAAATTGATGCGAGACCAGGAAACATTTAGGAGCACTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGgtaattttcccaatttttttttttcctgtgaaataattgaaatatcatgaaagtttcaagaggctttgatatgtatttgttacatgaaaatagaaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta