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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGGACCTTGAGCCTTACTGGCACATGCTGCTTCCATTTTCCTATGCTACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaactacattggtttttatgaaatggtgcaggtaaaattgtgaaagctacttttattcctaatatgcagtttcttgtcttgctcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00780.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 8
GACAGGACCTTGAGCCTTACTGGCACATGCTGCTTCCATTTTCCTATGCTACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaactacattggtttttatgaaatggtgcaggtaaaattgtgaaagctacttttattcctaatatgcagtttcttgtcttgctcag
|||| |||||    || || |||  |||||| || || || || ||||||  ||||||||| || ||||| ||||||||||||||||| || ||||| |||||||  | ||||       | | ||  ||| | || |      |   | ||| |   || | |||||| | ||  || ||| |        
GACATGACCTCAGACCCTATTGGAGCATGCTACTGCCCTTCTCATATGCTGTAGTTTCAGGGGCTGTAGGTTCATGCTCAGTGTTGTTTGCTAAATCACTgtaagtcagctactccaacatgt-tgccatgcttcatga-----tacaatagcca---ttgtgcctaatgt-caactttttggcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040762|gb|FQ438306.1|FQ438306
EST:     ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: gi|351046211|gb|FQ442589.1|FQ442589
EST:     ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: gi|351030030|gb|FQ430772.1|FQ430772
EST:     ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: gi|351043780|gb|FQ431332.1|FQ431332
EST:     ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: gi|351013510|gb|FQ425541.1|FQ425541
EST:     ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: gi|352765309|gb|FQ466006.1|FQ466006
EST:     ACAGTTTCAGGTGCCGTAGGACCATGCTCAGTGTTGTTCGCAAAATCTCT                         CTCCAACCTGCTGACATTGGCAATGTCTAGTGGCTA
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTA