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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACCATGGTTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctctctctctctctctctctctctctctctctctctctctctctctatctatctatctatccatctatctctctctgagctttgctgagtttgtgttgttccttttcatgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01660.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 8
TTCTTTCAATGGTAAGCCTGTAAAGAATCTGAAGAGCCTGGCCACCATGGTTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctctctctctctctctctctctctctctctctctctctctctctctatctatctatctatccatctatctctctctgagctttgctgagtttgtgttgttccttttcatgcag
| ||||||| | ||| ||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||| | | |||| || || |||||||| |||||||||  |||||  |  |    |     |   ||  ||  ||| | ||| ||    |  ||  |  ||| |   ||      ||||   ||||   |     | |                 
TGCTTTCAACGATAAACCTGTGAAGAATCTGAAGAGCTTGGCCAACATAGTTGAGAGCTGTGATGATGATTATCTAAAGTTTGATCTGGAATACCAACAGgtttactctcattgacctatttcagttggttcattccttctgtgtctgtcatgttaaatagaaatatgcccttaaaatattctg---tttggaaaagaaattt-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882339|gb|DT031394.1|DT031394
EST:     TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAG                         ATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
genomic: TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctc ... tttcatgcagATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
EST: gi|71884182|gb|DT033237.1|DT033237
EST:     TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAG                         ATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
genomic: TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctc ... tttcatgcagATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
EST: gi|71885148|gb|DT034203.1|DT034203
EST:     TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAG                         ATAGTGGTCCTCCAA
genomic: TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctc ... tttcatgcagATAGTGGTCCTCCAA
EST: gi|71883362|gb|DT032417.1|DT032417
EST:     TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAG                         ATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
genomic: TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctc ... tttcatgcagATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
EST: gi|71884579|gb|DT033634.1|DT033634
EST:     TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAG                         ATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA
genomic: TTGAGAGTTGTGATGATGAATTTTTAAAATTCGAACTGGAATATCAACAGgttctctctc ... tttcatgcagATAGTGGTCCTCCAAACTAAAACTGCCAAAGCAGCAACTTTAGATATTTTA