Sequence
atgc intronic sequence ATGC exonic sequenceTAACGGTGTCCCAGATTTCCCTAATGGAAGGCAAGTTTTGGCAGTCTATCCAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAGgtgacaatcccatccatctactctaagtaatgtgctggttggtgctcatattataggttgttttttctaatgaacatattagagttattttacttttcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G08050.1 (Glycine max), 5'ss of exon 8
TAACGGTGTCCCAGATTTCCCTAATGGAAGGCAAGTTTTGGCAGTCTATCCAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAGgtgacaatcccatccatctactctaagtaatg----tgctggttggtgctcatattataggttgttttttcta-atgaacatattagagttattttacttttcct-------------------------------------------------------------------------
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TTCTAGCGCTCAAGATTTCCCTCCTGGAAGACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCATCGCAGAgtaataattctctcattttccttagtagagtgagattacttcttgattctctgacttccatcaatttgtagtatgtgaatccttgctagttagtataacttttgtgacaatgacttaatactgaccaatattattttgcatgttctgggttattctccaacatttcgcaattgtgcag
upper sequence: Vv14s0066g00210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G07460.1 (Glycine max), 5'ss of exon 7
TAACGGTGTCCCAGATTTCCCTAATGGAAGGCAAGTTTTGGCAGTCTATCCAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAGgtgacaatcccatccatctactctaagtaatgtg-ctggttggtgctcatattataggttgttttttctaatgaacatattag--agttattttacttttcct
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TTCTAGCGCTCCTGATTTCCCTCCTGGAAAACATGTTTTGGCGGTCTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCCTCGCAGAgtaataattctctcattttccttagtagagtgaaattacttcttgattctctgacttattaatttgtagtatgtgaatccttgctagttagtataacttt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83274402|gb|DV938499.1|DV938499EST: CAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAG AGGAAGACCGATGA
genomic: CAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAGgtgacaatcc ... aaaatgccagAGGAAGACCGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACGGTGTCCCAGATTTCCCTAATGGAAGGCAAGTTTTGGCAGTCTATCCAGGGACAACTGCACTTTATAAAGCAACTGTTGTCAATCCCCATCGTAAGgtgacaatcccatccatctactctaagtaatgtgctggttggtgctcatattataggttgttttttctaatgaacatattagagttattttacttttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaca