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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcacattgtatttgtag

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttcta------gatcattacacattgatcactctttgcag-----agctcttattgactctttcacattgta-tttgtag
 ||||| ||||| || |||||  | |||||||||||||| ||||| || || ||||||||||| |||||  ||||||||||||||||| |||||||||| ||| || | ||     | |  | |   |       ||  |||  |||  ||     |||| |      |  || |  |    ||   |  | ||  | |||||
TGCTGACATTCTTGATCCTGCTTTGATGCGATCTGGTCGTTTGGACCGAAAGATTGAGTTTCCTCATCCATCTGAAGAAGCAAGAGCTAGAATCTTGCAAgtaggtttccagaacctgtgatgtctaatcagctaatgtttattcatccatttgcttttgtaatccacaagtcatgctttaactaatatgtggttctctgtag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatg-------aatattttcttctagatcattaca-cattgatcactctttgcagagctcttattgactctttcacattgtatttgtag-
 ||||||||||| || ||||| || ||| ||||||||||  |||| || || |||||||| || |||||  | || |||||||||||| ||||| ||||||||| |       |       ||||| || | |||| ||| ||   | |    || | |||||        | ||||    ||| |     |  | ||| 
TGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAGCAAGAGCTAGAATCCTGCAGgtattttgctcgggccactaaaatatgttgtactagctcagtatggcctcccccagtatttgctccaaaactgttgatatcttcccccctaaggtctagt

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatca--ttacacattgatcactctttgcagagctcttattg--actctttcacattgtatttgtag-------
 ||||| || || |||||||| || ||||||||||| || ||||| || || |||||||| || || ||  | ||||||||||||||| |||||||||| ||  ||||  |     |||  ||   | | | |  ||   || ||      ||  | ||  |  ||||    |||         |||||| ||         
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G100873_T01 (Zea mays), 5'ss of exon 1
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatca--ttacacattgatcactctttgcagagctcttattgactctttcac--attg-tatttgtag---------------
  | ||  | || |||||||| || |||||||| || ||  |||| || || |||||||| || || ||  ||||||||||||||||| |||||||||| ||  |||| ||     ||| |||   | | | |  ||   || |||    | |||      | || | |   || || ||  | || | |||   |               
CACCGACGTCCTTGACCCTGCTCTGATGCGATCAGGACGGCTGGACCGCAAGATTGAGTTCCCTCACCCATCTGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctccacaacttatgttcaatttgctgaagtttgtcaatgaatgatgtttttgcttcactcagtaggtcatttaccaactgatgttttctgtatgtcgcactgtag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgact-ctttcacattgtatttgtag
 || |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||  | ||||| ||   ||  | ||  |  ||| ||   |  ||   ||              |||| |  ||| ||||| || |||| |||   ||  ||
TGCAGATATTCTTGACCCTGCCCTTATGCGTTCTGGTCGATTAGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttggtgtctttaaacttcatctgctgacttgtttttcaa------------acagaacatttactgactgctctcactttgatatttcag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgact-ctttcacattgtatttgtag
 || |||||||| || ||||| || ||||| |||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||  | ||||| |||  ||    ||  ||| | |   ||      ||||||| ||| ||     | | |  ||| ||||| |  |||| |||   || |||
TGCAGATATTCTTGATCCTGCCCTGATGCGTTCTGGTCGTTTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttgttgtcttccaaactttacctgctga------cacattgttcaatc-----aaaacatttactgactaccctcactttgatattttag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgac-tctttcacattgtatttgtag
 ||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||  | ||||| ||   ||    ||| || | | ||          |||||  |      |  |||| || ||  | |  | |||||||||    |  |||
TGCTGACATTCTTGATCCTGCCCTTATGCGTTCTGGTCGATTGGATCGAAAAATTGAGTTCCCACACCCAACTGAAGAAGCAAGAGCCCGAATTCTACAGgtttggtatcttcaaattttatttgctg---------acatt--ttttctctgacagaacttttgcttatgtttttcacattaatatcatag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgt---atgtc-ttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttatt-gactctttcacattgtatttgtag-----------------------------------------------------------------------------------------
 |||||||| || || ||||| |||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| ||||   | ||||| |||||    | || || | || || ||||||| |   || ||    |||  |   || ||  | ||||   ||| ||    ||||   || | ||  |                                                                                          
TGCTGATATACTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCGAGTTTCCGCACCCCACTGAAGAAGCTAGAGGCAGGATCTTACAGgttctgtatcctttactgcatcttttcttttt--tctttctttatttctatgtcgttttaaagctaaaattagagagcttca---tgcacttagacaagtcttgctgtgattttctatgtattccgcggataacttatcttgggtactgttttgtttttgcataatgttggcgatggggttacag

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcacattgtatttgtag
 || |||||||||||||| ||||| ||||| ||||||||||| ||  | || |||||||| ||||| || || |||||||| |||||  ||||||||||||| |||||       || |||    |  || | ||    ||   | |     |           | | || |      || | ||      
TGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctctccc--atttttcaaacatgacccttggtgataagtaaaaggctctcataacacaactaacccaactgaat-gaatccag--

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 5'ss of exon 8
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcac--attgtatttgtag-------------------------------------------------------------------------------------
||| |||||| ||||||||||  | ||||| ||||| || |||||| | || ||||||||||| ||||| || || || ||| ||||||| || ||||||||  |  |  ||  ||||     |  ||||   | |    |  || |  || | |      | ||   |   ||||||  ||||| ||  |                                                                                       
AGCAGATATTTTGGACCCTGCTTTGATGCGTTCTGGACGTTTGGATAGGAAGATTGAGTTTCCTCATCCAACGGAGGAGGCACGAGCTCGTATTTTGCAGgttcggat--aaacaatagcgcttggtagactttgaagtttgcataatcctgtacccctaacctaaccatgttttcacctattgttttactgtttgatccttctataattataccacctatacagatttttatgagcaggatatcttatcaatcactgtaatgaactttcacctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245929|gb|CD711748.1|CD711748
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|46918304|gb|CN547633.1|CN547633
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATTTTGCAG                         ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110384620|gb|EC949072.1|EC949072
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110387216|gb|EC951866.1|EC951866
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110377043|gb|EC942103.1|EC942103
EST:     AGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|71880359|gb|DT029414.1|DT029414
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|34550777|gb|CF518995.1|CF518995
EST:     AAATTGAGCTTCCACATCCCACTGAAGAAGCAAGAGCTTGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110718444|gb|EE095285.1|EE095285
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|27585610|gb|CB008305.1|CB008305
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|71878498|gb|DT027553.1|DT027553
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|71878266|gb|DT027321.1|DT027321
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|33408222|gb|CF213849.1|CF213849
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAGGAGCTCGAATCTTGCAG                         ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|45771197|gb|CN007049.1|CN007049
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|30128623|gb|CB913962.1|CB913962
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|30252313|gb|CB969864.1|CB969864
EST:     AAATTGAGTTTCCACATCC-ACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|30252322|gb|CB969873.1|CB969873
EST:     AAATTGAGTTTCCACATCC-ACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|83275987|gb|DV939995.1|DV939995
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACCCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110405468|gb|EC971009.1|EC971009
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|30300725|gb|CB977519.1|CB977519
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATTTTGCAG                         ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110722804|gb|EE099394.1|EE099394
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|110375176|gb|EC940137.1|EC940137
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|34543899|gb|CF512131.1|CF512131
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: gi|71877789|gb|DT026844.1|DT026844
EST:     AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG                         ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcacattgtatttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT