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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctcctcaatactatgctcttgtagttctttcatgtattgacttttgaccgagctaatgcgatgttcttggggtttag

Basic information

species Vitis vinifera
transcript Vv14s0060g02160.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g22430.1 (Oryza sativa), 5'ss of exon 8
TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgta--agtgctcctcaat--actatgctcttgtagttctttcatgtattg-acttttga---ccgagctaatgcgatgttcttggggtttag---------
 |   |||||   ||   |  ||||||||| |||||| ||||||||||||    || || || ||||||||||||||||||||||||    || | |||  |  |  |  |   | | ||| |    | |   | |  | |||    | |||   | | |  ||  |   ||||||         
CCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCTTGAAGGCAAAGGAGTTTGGTGTCATTGACAAGgtattgttgtttctccgttcatcaaacctctattgttttgctgttttcggcatatctgaagttcaagccg-tactagttttctattgtttagtcagccata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544987|gb|CF513219.1|CF513219
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110723416|gb|EE100702.1|EE100702
EST:     ATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: ATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110375703|gb|EC940714.1|EC940714
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110385484|gb|EC950016.1|EC950016
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110383404|gb|EC947776.1|EC947776
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|34545979|gb|CF514211.1|CF514211
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG