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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaatagtttactcttgttagtttttatgtattgtttcatcatgcataacaactccctgatgcttttatgatatgaccag

Basic information

species Vitis vinifera
transcript Vv14s0036g00750.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 7
CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaatagtttactcttgttagtttttatgtattgtttcatcatgcataacaactccctgatgcttttatgatatgaccag
||| ||| | |||||||| || |||| | | |||||||| |||||||| || || ||||| ||||| |||||||||||||||||||| |||||||| ||||| | |  ||   || |    | | |  |||  ||    ||   || | |   || ||  |  | ||| ||| ||  ||       
CTTAAAACGGTGTAAACTCTCAGGAAATATATTCAATATTCTTTTCAATCTGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataacccttaatatatttcaaatttgctgccaagt---attaagttaaataatccgataatg-tttaattgtag------

upper sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaatagtttactcttg----ttagtttttatgtattgtttcatcatgcataacaactccctgatgcttttatgata-tgaccag-------------
| ||||  | |||||| | ||||| | | | |||||||| || |||||||| || |||||  | || ||||| |||||||| || |||||||||||||||||  || | ||   | |           | | ||| |  | ||  ||  ||||  | | | | |  |   | | ||  | | | | |  |              
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgt--attacattactcatatcgaaaacctggatttcaattcttagttggtcat--aaagcgagtgtccagttcattattcacaattatgaactaaatcttattt

upper sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S7_163V6.2 (Physcomitrella patens), 5'ss of exon 11
CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaa----tcaaatagtttactcttgttagtttttatgtattgtttc--atcatg-cataacaactcc-----ctgatgcttttatgatatgaccag--
||| ||  | || ||| | |||||||   |||||||||||||||| ||||| || || ||  | |||||||| ||||||||||| || || |||||||||||||     ||  | | || |  |||     | || ||   ||  |||  |  |||  || ||| |        | |||| |    |    ||  ||   
CTTAAAGCGATGCAAATTATCTGGAAACTTCTTCAATATCCTTTTTAACCTCAACAAATTCGTAGCTTTTGAGACTCGTGATCCTTTCCTTATTCGTCAGgtaatatgttctcacatttaagacttcaacatcttaatcagttagttctgagaatgatatcacagcgtgaagaacagatgttcacctaggttggtcatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110403756|gb|EC969496.1|EC969496
EST:     TTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAG                         GAGCGTGAAAATCCAACATTGACCGAGTGGGATCGCTTTGCACATAGGGAA
genomic: TTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaa ... atatgaccagGAGCGTGAAAATCCAACATTGACCGAGTGGGATCGCTTTGCACATAGGGAA
EST: gi|161712742|gb|FC062314.1|FC062314
EST:     TTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAG                         GAGCGTGAAAATCCAACATTGACTGAGTGGGATCGCTTTGCACATAGGGAA
genomic: TTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaa ... atatgaccagGAGCGTGAAAATCCAACATTGACCGAGTGGGATCGCTTTGCACATAGGGAA