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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcctaataaatgatgtttaagatgtgaacaagttgttagctgattaacattgcttcctaatggtttcttatttgttattcaaatcaagattta...

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300481|gb|CB977275.1|CB977275
EST:     ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|110379523|gb|EC944723.1|EC944723
EST:     ATCAAATTAAGGGCCTGAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|110727225|gb|EE103744.1|EE103744
EST:     ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|110362584|gb|EC926127.1|EC926127
EST:     ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|30130413|gb|CB915752.1|CB915752
EST:     ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|46918393|gb|CN547722.1|CN547722
EST:     ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: ATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
EST: gi|110422750|gb|EC989080.1|EC989080
EST:     CTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT                         GTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC
genomic: CTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcc ... ttacaatcagGTATATTTTGAAATAGTGGAGGGCTCAAACATCACGGCAGAAAAACTATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATTgtgagtatcctaataaatgatgtttaagatgtgaacaagttgttagctgattaacattgcttcctaatggtttcttatttgttattcaaatcaagattta

- - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaag