Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCATCTTAGGTGGGGATGCAGAAAAGTACTTTATGATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaagtgcttccattgctgctcctttttaattttgtaagcgctagaagtcatgctttcagtgaaatgtcattaaaaatttgtacatcttaacaccagctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 8
GTTCCATCTTAGGTGGGGATGCAGAAAAGTACTTTATGATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaa-----gtgcttccattgctgctcctttttaattttgtaagcg-ctagaagtcatgctttcagtgaaatgtcattaaaaatttgtacatcttaacaccagctt
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GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctgtgttcttgtttgaaatcttaacatgcttggttagaatctaattgacattctcaaaatctt-tattgtcaataccttattaatttttattttctcag
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 8
GTTCCATCTTAGGTGGGGATGCAGAAAAGTACTTTATGATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaag---tgcttccattgctgctcctttttaattttgtaagcgctagaagtcatgcttt-cagtgaaatgtcattaaaaatttgtacatcttaacaccagctt------
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GTTCCATCTTAGGTGGGGATGCAGAGAACTGCTTTATGACAAATCTGCTGATGGGAGTATTTATGTTAGAGGACTTTCCATGTCAAAGgtgatatttgttttttttgtttgaaatctttacatacttg---gttagaatccaagtgacattgtcaaaaatctttatag-tcaataccttataatttttattttctcag
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 9
GTTCCATCTTAGGTGGGGATGCAGAAAAGTACTTTATGATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaagt----gcttccattgctgctccttttta-attttgtaagcgctagaagtcatgctttcagt-gaaatgtc---attaaaaatttgtaca---tcttaacaccagctt----------------------------------
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AATCCATCTAAGGTGGGGTTGCAGGGAGATACTTTATGATAAATCAGCAGATGGAGAAACTTATGTCACTGGACTAGCAATTTCTAAGgtgaaatttagcttcagacgtaggattttagtggactgcgaaaatgtatacatacattctgaaggttgcagcttctgggtagagaaaaagcacaaaactttgatatgaaagtaaaggactttttttgttttttggtttgctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965914|gb|GW839253.1|GW839253EST: ATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGG GCTACTAATAAGAAGATTGTGAGAGCAGATGCTTATGTTGCAG
genomic: ATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaagtgctt ... tatttctcagGCTACTAATAAGAAGATTGTGAGAGCAGATGCTTATGTTGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCCATCTTAGGTGGGGATGCAGAAAAGTACTTTATGATAGATCTGCAGATGGAGAAACATATGTCACTGGACTTGCAATGTCTAGGgtaagtgcttccattgctgctcctttttaattttgtaagcgctagaagtcatgctttcagtgaaatgtcattaaaaatttgtacatcttaacaccagctt
- - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa