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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATGTGGCCAACTTCCAGCCTGAGAAAGGGGCAATCCTTGCAAACGCAACACCTGTAGGAATGCATCCAAATACAGATCGAATTCCTGTGGCTGAGgttctctcttcttccatccagactaggaccatatttctcaatctggctttcatgctcaagatcatttgtttgcatttcag

Basic information

species Vitis vinifera
transcript Vv14s0030g00670.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00670.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G40240.1 (Glycine max), 5'ss of exon 17
TGAAGATGTGGCCAACTTCCAGCCTGAGAAAGGGGCAATCCTTGCAAACGCAACACCTGTAGGAATGCATCCAAATACAGATCGAATTCCTGTGGCTGAGgttct---ctcttcttccatccagactaggaccatatttctcaatctggctttc-----atgctcaagatcatt---tgtttgcatttcag----------
  ||||  ||| |||||| ||||| |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||   | |||  | ||   | | || |  || | || |  |||| | | |      ||  | ||  |  ||   | |||  | || |           
CAAAGAGTTGGTCAACTTTCAGCCAGAGAAAGGGGCAATTCTTGCGAATGCAACACCTGTAGGAATGCATCCCAATACAGACAGAATTCCTGTGGCAGAGgttctacaccctttattcaagtaaaataagtacaaaatt-tggatctagttcttcggatatttttaatgttgttctctatttaaaattgaagtatcatctt