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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag

Basic information

species Vitis vinifera
transcript Vv14s0030g00500.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag
||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |                      ||||||  | |    | | || | ||||| ||     |   |      ||| ||| | | | |||||   ||  |||                                                   
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaataatgcaa----------------------ttattagaaac----tggcttatatttttgttgggcatggatgcaaaatacattgatat-caaaattcattgcaatcag-------------------------------------------------

upper sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag
||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| |||||||||| |||  | || ||| ||   | | | ||  | || |  |    |  |  | |  |||| |  ||      |     |    ||| | |  |||||||  || ||||                                                   
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaatgata--attcaattactgaaaattggttaatgtttttgt----tgggcctatgcttttctagttcaaggatgcaaagcgtattgatgt--caaatttattgccatcag-------------------------------------------------

upper sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag
||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |     ||  |   |   |  || |||| |  |    |  |  | |  |||| |  ||| |   |      ||  ||| | | | ||||||  ||  |||                                                   
GATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGGgtaataatgcaa-----ttattagaaacgggcttatatttttgt----tgggcatatacttttctggtttatggatgaaaaatatattgatat-caaaatttattgcaatcag-------------------------------------------------

upper sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag
|| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| |||||||||  ||   || ||          |||   || ||      ||     | ||||  ||||| ||  |     || |  || || |||                                                                         
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaac-atgttaacct----------ttaacattctaccgg-gtctcaccatttttgatttttgttactgacaattatactgaaccttgcag----------------------------------------------------------------------