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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACTgtaagtagtataagacaagtaatcaacaccaaatttttcattccaaaaaacacctaatcatgtccctggtag

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G32960.1 (Glycine max), 5'ss of exon 16
GTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACTgtaagtag--tataagacaagtaatcaacac-caaatttttcattccaaaaaacacctaatca-tgtccctggtag
|| ||||| ||||||||  | || ||||| ||| | ||||||||||||||||||||||| || ||  |||||||||| || ||||| ||||||||||||   |||    |||  |   || ||  |||  | ||||    |||||   ||||  | | | ||  ||||
GTTGACACCAATGTTGGAAGGATAGCTGTTAGACTTGGATGGGTCCCTCTCCAACCACTTCCTGAAGCACTTCAGTTACACCTCCTTGAACTgtaagtatcttatgccccaaccagagaagacataaacatatcatagataaaaagtgctaactactatgccatgtag

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G34600.1 (Glycine max), 5'ss of exon 14
GTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACTgtaagta--gtataagacaagtaatcaacac-caaatttttcat-tccaaaaaacacctaatcatgtccctggtag
|| ||||| ||||||||  | || || || ||| | ||||||||||||||||||||||| || ||  |||||||||| || ||||| ||||||||||||  ||||    |||  |   || ||  |||| | |||| |  || ||   |  | |  | | ||  ||||
GTTGACACCAATGTTGGAAGGATAGCAGTTAGACTTGGATGGGTCCCTCTCCAACCACTTCCTGAAGCACTTCAGTTACACCTCCTTGAACTgtaagtattgtatgcctcaaccagagaagacataaatatatcatatataacaagtgctaactactttgccacgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023598|gb|FQ432981.1|FQ432981
EST:     GTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT                         GTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAA
genomic: GTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACTgtaagtagta ... tccctggtagGTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAA