Sequence
atgc intronic sequence ATGC exonic sequenceTCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaatttgcagtcccatgtaaaatgagaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G098078_T02 (Zea mays), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttc-------ttatgat-ttgtactactagtattgtagttaacagctgccatgaattttt-gttcttagg--aattcaatttgcagtcc--catgtaaaatgagaaat-------------------------------------------
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TCTCTACTTCCAGATTACCAGAGGCTCTTGAATTCCACACCTACTCGTAGACTAAATCCTTCAAAACTTATTGACAACAGCGgtaagctcaacatatttttcatgtcgttcagtcaacttttggggtgacatttatcacatttcttcagtgcatagtcttatcacaattattgtcctccatgtgggaattgcatttgttcgaaaagctgaaatggtgtctttggctctctgttttcag
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AC218972.3_FGT001 (Zea mays), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttct-tatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaa----ttcaatttgcagtcccatgtaaaatgagaaat--------------------------------------------------------------
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TCTCTACTTCCAGATTACCAGAGGCTCTTGAATTCCACACCTTCTCGTAGACTAAATCCTTCAAAACTTATTGACAACAGCGgtaagctcaacatattttctgtgtcgttcagccaacttttggggtgtcattttatctaattataatacatttcttcaatgcttagtcttac-cacaattattgtcctccatgtgggaattgcatttgttcaaaaagctgaaatggtgtctttggctctctgtttcag
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaa-tttgcagtcccatgtaaaatgagaaat--
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TCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGgtgagtgctccttgat-ataatatagatgggg-atttttctgct-tcatgatcaccagtaaacaagaaagaaaatttgctttagtattctatgtaactcattt
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaatttgcagtcccatgtaaaatgagaaat-------
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TCTCTGCTTCCAGATTACCAGCGGCTACTGAGTTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGgtgagtgcttcttgat-atatttttagt--tatcatttacagaaacattgttcacttagcattgttgg---agtttgctgctttgtttgaag-gattcatgtgtttt
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttat-gatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaa--ttcaatttgcagtcccatgtaaaatgagaaat
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TCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGgtgagtgctccttgatatataatatagatgggg-atttttctgct-tcatgatcacctgtaaacaagaaagtttgctttattattctatgtaactcatctta-
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaatttgcagtcccatgtaaaatgagaaat--
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TCTCTGCTTCCAGATTATCAGCGACTCCTAAGTTCCATGCCTTCTCGCAGATTGAACACCTCAAAACTTCTAGAAAATGGCGgtaa--tcttcctgtcttgattgcaaattttgtaccttaaacaattcactgtttttcgcttctttacatgttctttttctctgtatatttgcttttgtccctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720124|gb|FC066744.1|FC066744EST: TTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTG AATATTTCCAAAATAAGTTAGTGGATACTATACATTTCATGGACATTCTTA
genomic: TTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttctt ... gcattggcagAATATTTCCAAAATAAGTTAGTGGATACTATACATTTCATGGACATTCTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaatttgcagtcccatgtaaaatgagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa