1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTCTGATTGCATTAGTAGGGATGGTCCTGTATTCATACTACTGCACCCGTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAGgtacagtctgctgttaatctgtctttgctcctacagaccgataattatttgtgataattcatgacaaattttgagaatgattccag
species | Vitis vinifera |
transcript | Vv13s0067g02970.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAG GCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGGEST: gi|110715596|gb|EE093829.1|EE093829
genomic: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAGgtacagtctg ... atgattccagGCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGG
EST: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAG GCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGGEST: gi|110424917|gb|EC991292.1|EC991292
genomic: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAGgtacagtctg ... atgattccagGCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGG
EST: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAG GCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGG
genomic: GTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAGgtacagtctg ... atgattccagGCAAAGGAAGGTGAAGCTGATCCTCTAATCAATATAGAGAATGAAACTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTGATTGCATTAGTAGGGATGGTCCTGTATTCATACTACTGCACCCGTGAGGGTCAGCAAAAAACTTCAGAAGCATCAGCACAATCTTCTTCACAGgtacagtctgctgttaatctgtctttgctcctacagaccgataattatttgtgataattcatgacaaattttgagaatgattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC