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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGAAGGGTATTATCCTTTTATTCAATGCCAGAGTATGAATCATGGAAGGAAAGCTTGGGGGGAAATGCAAGTGGTTGGTCAATCAAGTACTATAAGgtttgtctcattgaattgtgaacagaaccaatatggtacttgttaacatgccctctcatcttcaatcattaattatcctttacactaatgtttgttctttcctcttctgaaactccacag

Basic information

species Vitis vinifera
transcript Vv13s0064g00560.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 5'ss of exon 8
AAATGGAAGGGTATTATCCTTTTATTCAATGCCAGAGTATGAATCATGGAAGGAAAGCTTGGGGGGAAATGCAAGTGGTTGGTCAATCAAGTACTATAAGgtttgtctcattgaattgtgaacagaaccaatatggtacttgttaacatgccctctcatcttcaatcattaattatcctttacactaatgtttgttctttcctcttctgaaactccacag
 ||    |  ||  |  | ||||| |||||||| ||||| |||  |||||| || ||| | || |||||||||||||||||||| || |||||||| ||||| |||          | |||   ||| ||  ||| |  |||||    |  |  | ||   |     |||  |  |   ||| | |    |  | |          |||   | |  |||
CAAAAAGATTGTCCTGCCATTTTACTCAATGCCTGAGTACGAACAATGGAAAGAGAGCCTTGGAGGAAATGCAAGTGGTTGGTCTATAAAGTACTACAAGgtctgttctccc----tttgat--gaatca-catgttgtttgttcggctttctgcacacgattgtatatttttcttgtgttaga-tgtcatcagctaaggatatcactggtgc-ctgcag

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 8
AAATGGAAGGGTATTATCCTTTTATTCAATGCCAGAGTATGAATCATGGAAGGAAAGCTTGGGGGGAAATGCAAGTGGTTGGTCAATCAAGTACTATAAGgtttgtctcattgaattgtgaacagaaccaatatggtacttgttaacatgccctctcatcttcaatcattaattatcctttacactaatgtttgttctttcctcttctgaaactccacag
||| || |    |||||| |||||||| ||||| || |||||||||||||  ||||||||||||   ||||||| |||||||   || ||||||||||||||||||       | |||| | ||     ||  | | | ||  |   |  || |    | |||| |  | || |           || | |  |||||||| ||| | |           
AAACGGGACAAAATTATCATTTTATTCCATGCCTGAATATGAATCATGGAGAGAAAGCTTGGGGAATAATGCAACTGGTTGGAAGATAAAGTACTATAAGgtttgt-------agttgtaagcatggagaaccttgaaattagtttgagtccattctgtgttcagttttaaagtgct--------tactttccgttctttc-tctacag-----------

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 8
AAATGGAAGGGTATTATCCTTTTATTCAATGCCAGAGTATGAATCATGGAAGGAAAGCTTGGGGGGAAATGCAAGTGGTTGGTCAATCAAGTACTATAAGgtttgtctcattgaattgtgaacagaaccaatatggtacttgttaacatgccctctcatcttcaatcattaattatcctttacactaatgtttgttctttcctcttctgaaactccacag
||| || |    |||||| |||||||| ||||| || |||||||||||||  ||||||||||||   ||||||| |||||||   || ||||||||||||||||||     | |  |  |    |||||    ||  | |||||    | |  |||  | |||| |  |  | ||    ||||  |  | | | ||||||| ||| | |           
AAACGGGACAAAATTATCATTTTATTCCATGCCTGAATATGAATCATGGAGAGAAAGCTTGGGGAATAATGCAAATGGTTGGAAGATAAAGTACTATAAGgtttgttgttgtaagcttggg---gaacct---tgaaatttgtttgagttcattct-gtgttcagttttagagtac---ttactttgtt-tctattctttc-tctacag-----------