1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaatgattcccatttgctggcatcatgttacatgagaactaaattgagataaactctacgctttttcag
species | Vitis vinifera |
transcript | Vv13s0019g05360.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|349827032|gb|FQ421305.1|FQ421305
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAATCAG GCCAGTGGGGCTAGAATAAAGATATCTGEST: gi|77581507|gb|DV219700.1|DV219700
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTG
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|71865533|gb|DT014588.1|DT014588
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|161713236|gb|FC063668.1|FC063668
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|87586077|gb|DY474538.1|DY474538
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|351046045|gb|FQ441428.1|FQ441428
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAA GCCAGTGGGGCTAGA-TAAAEST: gi|110391242|gb|EC956204.1|EC956204
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAA
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGEST: gi|351029639|gb|FQ427479.1|FQ427479
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAEST: gi|110376153|gb|EC941197.1|EC941197
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAA
EST: TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaatgattcccatttgctggcatcatgttacatgagaactaaattgagataaactctacgctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA