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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagataatattctttctattttcttgtaaaggaatactcagtataattttcatcag

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g44810.1 (Oryza sativa), 5'ss of exon 8
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagataata-ttctttctatttt--cttgtaaaggaatactcagtataattttcatcag--------------------
||||| || ||||| ||||| || ||||| ||||| |||||| | || ||||||||||| ||||| || ||||||||||    || ||||   | |||    | |       ||||| |||    |||| |  |||     ||  ||||     | ||| | || |                     
CTGGCACTAAAAGCGGGTGTATTTTATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAGgtgaagatat-gattagatattactggctttctattgtaatacttccaattattgtacctttctgtggggtacttttgtttattcttattactgatgatttgctctgagtag

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G129513_T01 (Zea mays), 5'ss of exon 8
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagataatattctttctattttcttgtaaaggaatactcagtataattttcatcag---
||||| || ||||||||||| || ||||| ||||| ||||| || || ||||||||||| || ||||| ||||||||||  || | ||||||   ||||    | ||  |||  || ||     ||  ||  | |    || |  |     | | || | |  |   
CTGGCACTAAAAGCAGGTGTATTTTATGACAAAGTATCAAACGTGACTATTTGGGGGAACCATTCGACGACTCAGgtgaa-gatttgattctaaattaa----acgagcagactattttgcagatacatttct-tcgctgattgttggcactgacttccctgcgtag

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 10
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagat--aatattctttctattttcttgtaaaggaatactcagtataattttcatcag
|| || ||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||| || |||||||| ||   |       |     || ||  ||  |  |   |||||   ||  | | |||||||    | |  |   |||  | || ||   
CTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttaggatcattactagaataatctgcctgaactgaatatatctttaactctcttgtatgatattggt-gttatcttgttaatag-

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G34150.3 (Glycine max), 5'ss of exon 8
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagataatattctttctattttcttgtaaaggaatactc-agtataattt-tcatcag--------
|| || ||||| |||||||| ||||||||||||||||||||||| || || ||||| || ||||| || |||||||| || |||       |  |  || ||  || ||  |    |||  ||  | | |||| ||    | || ||  || | |  | | |||          
CTAGCCCTCAAGGCAGGTGTGTTCTATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaaggatcattaccagaataatgtgcatgaactgaatttctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550508|gb|CF518726.1|CF518726
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|34550427|gb|CF518645.1|CF518645
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|110725848|gb|EE102783.1|EE102783
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|30137894|gb|CB923232.1|CB923232
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|351040604|gb|FQ438148.1|FQ438148
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|110381192|gb|EC946513.1|EC946513
EST:     GTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: GTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|28963316|gb|CB342349.1|CB342349
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGGCCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|110367124|gb|EC931047.1|EC931047
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|110392317|gb|EC957652.1|EC957652
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|351046814|gb|FQ454424.1|FQ454424
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|349811478|gb|FQ409474.1|FQ409474
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|18458011|gb|BM436289.1|BM436289
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG                         GTCCCAGACTTTCTAAACGCTAGAATTAATGGCTTGCCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
EST: gi|29785366|gb|CB342287.2|CB342287
EST:     ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGGCCACTCAG                         GTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC
genomic: ATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaat ... ttttcatcagGTCCCAGACTTTCTAAATGCTAGAATTAATGGCTTACCCGTCAAAGAGGTC