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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g05000.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G03970.1 (Glycine max), 5'ss of exon 9
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagattt-ctaattgttgattcacattgtattaagata-tttctgaagcataagtgtgttcgaatttcag--------------------------
||||| ||| || ||||||||||||||||||  ||| | || || ||||||||| ||||||||||| || || ||||||||||||||||| |||||  | ||||||| |  | |  || ||  ||  | ||  | |||  |  |   || |   ||    |||| |||  |  ||||  |                           
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaaattgtaatcaatgttctgtaaatgtttctctag

upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G14450.1 (Glycine max), 5'ss of exon 8
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagattt-ctaattgttgattcacattgtattaaga--tatttctgaagca-taagtgtgttcgaatttcag--------------------------------------
||||| ||| || ||||||||||||||||||  ||| | || || ||||||||| ||||||||||| || || ||||| ||| ||||||| |||||  | ||||||| |  | | ||| ||  ||  | ||  | |||  |  || |  | |     | |   ||    ||||| ||     |                                      
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtcaatgctttgctcttttatcatagaaattaaaaaaaaaattgtaatcaatgttctataattgttcaaacaaatgatcgataaatcttctatatcgtgtaaatgtttctctag

upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G03230.1 (Glycine max), 5'ss of exon 8
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaatt--gttgattcacattgtattaagatatttctgaa---gcataagtgtgttcgaa----tttcag-----------------------
 |||||||| || ||||||||||| ||||||  ||  | ||||| | | ||||||||||||||||| |  || ||||||||||||||||| || ||  | ||||||   |   | | | | |    | |  |  | |||||| | |    ||| | |     || |  |||| | ||      ||| |                       
ATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggatactgctctgtgacaaggatactataaattgtagtcaatgttttataattgttcaaacatgtgattgagaagtcttctgaagcatgtaaatgtttttttaag

upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G42140.1 (Glycine max), 5'ss of exon 4
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaattgttgattcacattgtatta-agatatttctgaagcataagtgtgttcgaatttcag-------------------------------
 |||||||| || ||||||||||| ||||||  ||  | ||||| | | ||||||||||| ||||| |  || ||||||||||||||||| || ||  | ||| ||   |   | | | | |     |||  ||| | ||||  ||||  ||   ||   |       |  || |   |                                
ATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtacgtggatactgctctgtgacaag-gat--acaatatattgtagatgctttataattgttcaaacatgtgattaagaagtcttctgaagcatgtaaatgtttttttaag

upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcag
||||||||| |||||||| |||||||| | |||||| | ||| ||||| || ||||||||||||||  | || ||||||||||| ||||| || |||||||||   ||    |   |    |||    ||    ||  |||   |||   |||   | || | | ||  ||  || |||
TTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGgtaccaatcattattctcacgattaac-atgactatattatgcggatgactcttctgaatcattttggacg--ttacag