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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattccctttctctggtacttgtttcttttctgacttttcccttttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag

Basic information

species Vitis vinifera
transcript Vv13s0019g04640.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 10
ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattccctttctctggtacttgtttc-ttttctgacttttcccttttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag
 ||||||||||||  || |||||||||||| || ||||||||||||||||| |||||  | | | | ||||| || |||||||| |||||||||||||||||   | |  |     | | | ||   |||||| | |  |||   |       ||   | ||    | | |   |||  |  | || |  |||  || | ||                                                                                             
GCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgtgtgtatctttc---agtatgtgaacattttcatatgggataggaaatgcacatcgacattaga-gatgcacattttatgctttggcacttctgttgtaatat-------------------------------------------------------------------------------------------

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 10
ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattcccttt-ctctggtacttgtttcttttctgacttttccct-tttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag
|||||||||||||  || |||||||||||| || ||||| ||||||||||| |||||  | | | | ||||| || |||||||| |||||||||||||||||| | |  ||  |  ||| | ||    ||||| | |  |||   |       ||   | || |    | |    ||| |  | ||||  |||  |  || ||                                                                                             
ACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGgta-tgtagct--ttcattatatgaactttttcatatgggataggaaatgcacatcggcattacagatgcaacattttatgctttgacacttctgtgcttaat---------------------------------------------------------------------------------------------

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G10360.1 (Arabidopsis thaliana), 5'ss of exon 8
ACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttactaataaattttttgtttattttcttgttagatttcatgcttgaattccctttctctggtacttgtttcttttctgacttttcccttttgatgatctctgttttatcattattgtgttattattttacctataattttttttttacttcatttgtcccctgaggttcgttcctttgcttgtttag
 |||  |||||||  |   || ||||  ||||||||||| ||||||||| | || || |||| ||| ||||| || ||||| || ||||||||||| ||||||   ||   ||       ||  || |  ||  || |     |||||        | |  |       | |  |    |||| | || |                                                                                                        
GCATATTGATGATATAGAAACCCAACGGATCATTATGGAGGAAATCATGGATTCAGTCTGTACTCTAGCACAAGATCAATACGGAAATTATGTTATCCAGgtaagattctgaag-----cttaattgacgtttctgct-----tcatgaaaatggacacactgataaagattaatcctgtttccggctgtag------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349810204|gb|FQ401650.1|FQ401650
EST:     AGTCCGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAG                         CATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
genomic: AGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttac ... gcttgtttagCATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
EST: gi|349813014|gb|FQ411254.1|FQ411254
EST:     AGTCCGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAG                         CATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
genomic: AGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttac ... gcttgtttagCATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
EST: gi|349820003|gb|FQ404725.1|FQ404725
EST:     AGTCCGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAG                         CATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
genomic: AGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttac ... gcttgtttagCATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
EST: gi|349813209|gb|FQ411449.1|FQ411449
EST:     AGTCCGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAG                         CATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG
genomic: AGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATTATGTTATTCAGgtacttttac ... gcttgtttagCATGTCTTGCAATATGGTAAGCCACACGAACGATCTGCTATTATCAGCAAG