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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTGATTAAAATTGAAAATGATGCTGATGTTGAGGCAGCACAACTGGCTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactattctgactacccggattttggctatgctagattaaatcatttctttctactccttgtgacttctttttttttttttttttttccaactcta...

Basic information

species Vitis vinifera
transcript Vv13s0019g02360.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 8
AGAACTGATTAAAATTGAAAATGATGCTGATGTTGAGGCAGCACAACTGGCTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactattctgactacccggattttggctatgctagattaaatcatttctttctactccttgtgacttctttttttttttttttttttccaactcta
 ||    ||||    |||||||||||| |||||||||||||||||| | ||||| |||||||| || |||||| | ||| ||   |||||||| ||||||| |   ||  | ||  | | |  |     | | |    | | |     | || |  || |  |  | || | |  | | ||| | |              
GGATGCAATTAGGTCTGAAAATGATGCCGATGTTGAGGCAGCACAAGTTGCTGGTTATGAAAAGTCGTTGGTTGCTAGGATGACCCTAAAGCCAGGAAAGgta---cttctttgttt-ctcacacccaagttttttctgttcat----tgtcctcataattttactaacgtttgatatatttctgtag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728239|gb|EE103633.1|EE103633
EST:     CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAG                         ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
genomic: CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactat ... cattttacagATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
EST: gi|110701185|gb|EE078493.1|EE078493
EST:     CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAG                         ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
genomic: CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactat ... cattttacagATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
EST: gi|161709197|gb|FC060516.1|FC060516
EST:     CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAG                         ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
genomic: CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactat ... cattttacagATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
EST: gi|110725458|gb|EE101979.1|EE101979
EST:     CTGGATATGAAAAATCATTGGTTTCAAAGCTGGTTCTAAAGCCTGGAAAG                         ATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA
genomic: CTGGATATGAAAAATCATTGGTTTCAAGGCTGGTTCTAAAGCCTGGAAAGgcaagactat ... cattttacagATTTCAAGCCTTGCAAACTCAATTCGTGTGCTTGCAAACATGGAAGAACCA