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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGAGAAAGAAATACTACTACGGCATGCCTATGGTCTGGGATATCCAGAACCTAATGTAACATTTGCTCTATGCCGAGGCAGTTGGTCTTCACCAGCAgtaagcgcaccaaatttgatcctctgtcaactatttttacaaaactcaacaagtttattgaaagaaatttgtttgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g01510.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G07390.1 (Glycine max), 5'ss of exon 8
GGATGAGAAAGAAATACTACTACGGCATGCCTATGGTCTGGGATATCCAGAACCTAATGTAACATTTGCTCTATGCCGAGGCAGTTGGTCTTCACCAGCAgtaagcgcaccaa-----atttgat----cctctgtcaactatttttacaaaactcaa--caagtttat-tgaaagaaatttgtttgcag----------
|||||| || ||| | ||| | || ||||| |||||||||||||||||||| |  ||||| || |||||||| || || ||||  ||||| |||||||||||||| |||| ||      ||| ||    |   | |    | |||||  || | | ||    |   ||| |||   ||| ||| |               
GGATGAAAAGGAAGTGCTATTGCGTCATGCTTATGGTCTGGGATATCCAGAGCTCAATGTCACCTTTGCTCTTTGTCGTGGCACCTGGTCCTCACCAGCAgtaagtgcactaaccaaactttaatgaaacaagttttggtttttttttaaatagtaaaattgatcctatatgatgaaaaattgatcttgaaagataaaaa

upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G39690.2 (Arabidopsis thaliana), 5'ss of exon 8
GGATGAGAAAGAAATACTACTACGGCATGCCTATGGTCTGGGATATCCAGAACCTAATGTAACATTTGCTCTATGCCGAGGCAGTTGGTCTTCACCAGCAgtaagcgcaccaaatttgatcctctgtcaactatttttacaaaactcaa-caagtttattga--aagaaatttgtttgcag------
 || ||||||||||  || || || ||  | || ||| | |||||| |||| || ||||| |||||||| || ||||| || |||||||||||||||||||| || | || |||  |  |  | |    || | | | | |  ||||||      |||| ||  | ||||||  | |||        
TGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGTGACATTTGCACTTTGCCGTGGAAGTTGGTCTTCACCAGCAgtgagtggacaaaacatagttttatcatgacgaatgt-atatcactcaaatgtacttatagatgatgaaattgatatgcttgtgcag