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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTGCAAAGTCCTACCCTCTGGATGCAATTATGAAGGATTGCAGGGACTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagtttcatttggagaaatttgtctctgtggtgcactatgggcattcatttttgaagttacaaaaacaaaaaaaaaactaatgcaaataacatctttgttag

Basic information

species Vitis vinifera
transcript Vv13s0019g01070.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g01070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G07450.1 (Glycine max), 5'ss of exon 8
CCAAGTGCAAAGTCCTACCCTCTGGATGCAATTATGAAGGATTGCAGGGACTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaa-gtttcatttggagaaatttgtctctgtggtgcactatgggcattcatttttgaagttacaaaaacaaaaaaaaaactaatgcaaataacatctttgttag
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CCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGgtattggatgttccaatacatactacttccttttct-------tataaaaagt--ttggtggaatccttataatgcacatgacactt-tcttcattatgtttgagcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046512|gb|FQ453128.1|FQ453128
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352794375|gb|FQ481606.1|FQ481606
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351048097|gb|FQ442067.1|FQ442067
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352786528|gb|FQ479735.1|FQ479735
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351038424|gb|FQ461116.1|FQ461116
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351054685|gb|FQ462715.1|FQ462715
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351035218|gb|FQ458575.1|FQ458575
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|71874359|gb|DT023414.1|DT023414
EST:     CTAC--CCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351032693|gb|FQ462407.1|FQ462407
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351044866|gb|FQ449120.1|FQ449120
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352795590|gb|FQ480178.1|FQ480178
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352793767|gb|FQ481122.1|FQ481122
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|77585559|gb|DV221873.1|DV221873
EST:     CTAC--CCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC