Sequence
atgc intronic sequence ATGC exonic sequenceAGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 8
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
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AGGTACTTCTTCTTGCGGGAAGTGGAATTTGGCAATGACGGGGACTATTCAGAGGAACGCTTTATCAATATAGTCAATGCGCATCTTGCCAACACCATTGgtatttctactcaaagcacctttgtttctggag--tataaaacgtcttgatggcttttagatttttctttagctggt-gtagaagtttttcaccaatg--cgcatcttta---tttgttgttaat------gatcattctctcatct----taaacag
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 8
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
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AGGTATTTCTTCTTGCGGGAAGTAGAATTTGGCAATGATGGGGACTATTCAGAAGAACGCTTTATCAATATAGTGAATGCTCATCTTGCTAATACAATTGgtatttctacttaaattacctttgtttctgaaacatgtatata--caattcatgtgtgctgaaattgttatgccattttccttctttcttcacttggtgctccttgtttctgcctatgcatctttatgtgttaataactatctcactgtcttgaacag
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 8
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
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AGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGAGACTATTCAGAGGAACGCTTCATCAATATTGTGAATGCACATCTTGCCAATACAATTGgtactttcaacctactttcattacttgtaacat--tcagtaacaaatattgatatgtatttccttcgctattttggcag-------------------------------------------------------------------------------
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 8
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtat-ttctactttgtttttttttttttttctatcttctctaacgcc-tacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
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AGATACTTCTTTGTCAGAGAGGTGGAATTCGGCAATGATGGAGACTATTCAGAGGAACGCTTCATCAATATTGTGAATGCACATCTTGCCAATACAATTGgtaccttcaaccttgctttcattacttgtagcat--tcagtaacaacatattgatttgtattccctccaatattttggcag-------------------------------------------------------------------------------
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 7
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatg-attggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
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AGGTATTTCTTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAAATCGTCAATGCACATCTCGCCAACACTATAGgt-ttcttactctacgaaaactaaatcttaagtagttgttca-----gccttttggttatttggtacagaacttgtttctgaaaaatgtttatcaatgcatttctcttcag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374714|gb|EC939637.1|EC939637EST: GGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTG GAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAA
genomic: GGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctac ... ctctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATACTTTTTCCTTAGGGAGGTGGAATTTGGCAATGATGGGGACTACTCGGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA