Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g40140.1 (Oryza sativa), 5'ss of exon 7
GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggt--aaatatg-atcctcagttattggctgaaaaattgcag
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GTGTGCTACTCCTGGTGGGTGCTCTCAAGCTTGATAATGATTGATAGAGTGCACTGGATTGACAAGGACAAACTTGCAAAATTCATACTAAATTGCCAGgtaaatgcttgaaatcttgcatctgatttttgtgtaaccatgtgtccattaatcaaataaaaatatc---tgtctcctgttcccagtctttccatttacattttttaaatatataatcttgttcattggtag-----------
upper sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G124557_T04 (Zea mays), 5'ss of exon 5
-GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgt--cagttctaa-actaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
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GGTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttctattattcccaccactgccatttgcgtaacccgtatgtcccttgacttataacaagtactggttccaactcttctcattcatgttgatcggcag---------------------------------------
upper sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G124557_T02 (Zea mays), 5'ss of exon 8
GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgt--cagttctaa-actaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
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GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttctattattcccaccactgccatttgcgtaacccgtatgtcccttgacttataacaagtactggttccaactcttctcattcatgttgatcggcag---------------------------------------
upper sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G11710.1 (Glycine max), 5'ss of exon 8
GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
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GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTTCATTGGATCAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagtt---agttgaatgt-ctttttctgtgtttatctgcatgttcttttttctttttggggttttaattattgtcaggcagta--tttctgaaatattatgtatgttgaaactgtaag--------------------
upper sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G28630.1 (Glycine max), 5'ss of exon 8
GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
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GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagtt---agttgagtg--tcttttctgtgttt--ataaatctgcatgttttctttttctttttggggtttcaattattgtccggtagtatttctg------aaatattatgtatgttga--aactgaaag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351047683|gb|FQ455080.1|FQ455080EST: CTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAG GATAGGGAAAATGGAGGAATTTCTGATAGACCTGATGATGCCGTGGATGTC
genomic: CTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttcta ... aaaattgcagGATAGGGAAAATGGAGGAATTTCTGATAGACCTGATGATGCCGTGGATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
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